Therapeutic and diagnostic tools for impaired glucose tolerance conditions

ABSTRACT

Disclosed herein are novel genes and methods for the screening of therapeutics useful for treating impaired glucose tolerance conditions, as well as diagnostics and therapeutic compositions for identifying or treating such conditions.

CROSS REFERENCE TO RELATED APPLICATIONS

[0001] This application is a continuation of application U.S. Ser. No.09/205,658, filed Dec. 3, 1998, which is a continuation-in-part ofPCT/US98/10080, filed May 15, 1998, which is a continuation-in-part ofU.S. Ser. No. 08/888,534, filed Jul. 7, 1997, now abandoned, and U.S.Ser. No. 08/857,076, filed Aug. 3, 2000, which is a continuedprosecution application of U.S. Ser. No. 08/857,076, filed May 15, 1997,now U.S. Pat. No. 6,225,120.

STATEMENT AS TO FEDERALLY SPONSORED RESEARCH

[0002] This invention was made in part with support from the Federalgovernment through NIH Grant Nos. AG05790 and AG14161. The Governmenthas certain rights in the invention.

BACKGROUND OF THE INVENTION

[0003] This invention relates to compositions and methods useful fordelaying or ameliorating human diseases associated with glucoseintolerance.

[0004] Diabetes is a major disease affecting over 16 million individualsin the United States alone at an annual cost of over 92 billion dollars.Type I diabetes or insulin-dependent diabetes (IDDD) is an autoimmunedisease. In the IDDM patient, the immune system attacks and destroys theinsulin-producing beta cells in the pancreas. The central role ofinsulin in human metabolism is to aid in the transport of glucose intomuscle cells and fat cells. The body's inability to produce insulinresults in hyperglycemia, ketoacidosis, thirst, and weight loss. Inaddition, diabetics often suffer from chronic atherosclerosis and kidneyand eyesight failure. A patient with IDDM requires daily injections ofinsulin to survive.

[0005] The most common form of diabetes is non-insulin dependentdiabetes (NIDDM) or Type II diabetes. Type II diabetes is a heterogenousgroup of disorders in which hyperglycemia results from both impairedinsulin secretory response to glucose and decreased insulineffectiveness (i.e., insulin resistance). Older people who areoverweight are at particular risk for Type II diabetes. Genetic studieshave suggested that, Type II diabetes is found in families and that thedisease may be due to multiple genetic defects. In addition, the linkbetween obesity and Type II diabetes is strong. Approximately 80 percentof Type II diabetics are obese. Weight loss and exercise can beeffective to keep blood glucose levels normal, reducing the long-termcomplications of the disease.

[0006] At present there are few reliable methods for presymptomaticdiagnosis of a genetic predisposition for diabetes or obesity. Thesearch for genetic markers linked to diabetes and obesity has provendifficult, and this is especially true for Type II diabetes.

[0007] Treatments for diabetes emphasize control of blood glucosethrough blood glucose monitoring. The majority of patients take oralmedications and/or insulin injections for appropriate control. Treatmentof diabetes is generally chronic and lifelong, and treatments aregenerally not satisfactory over the long run. In addition, insulintreatment may become increasingly ineffective as the disease progresses.While insulin has been known for decades, and within the past decade,the receptors for insulin and aspects of its signaling pathway have beenidentified, the transcriptional output from these signaling pathwayshave not been characterized. In addition, the molecular basis of theobesity-induced insulin resistance is unknown.

SUMMARY OF THE INVENTION

[0008] We have discovered that the C. elegans metabolic regulatory genesdaf-2 and age-1 encode homologues of the mammalian insulin receptor/PI3-kinase signaling pathway proteins, respectively. We have alsodiscovered that the C. elegans PKB kinase and AKT kinase act downstreamof these genes, as their mammalian homologues act downstream of insulinsignaling. These results further endorse the congruence between the C.elegans and mammalian insulin signaling pathways, strongly supportingthe contention that new genes identified in the C. elegans pathway alsoact in mammalian insulin signaling. In addition, we have also found thatthe C. elegans PTEN lipid phosphatase homologue, DAF-18, acts upstreamof AKT in this signaling pathway. Thus, our molecular genetic analysismaps mammalian PTEN action to the insulin signaling pathway.

[0009] We have also discovered that the DAF-16 forkhead proteinrepresents the major transcriptional output of this insulin signalingpathway. For example, we have discovered that it is the dysregulation ofthe DAF-16 transcription factor in the absence of insulin signaling thatleads to metabolic defects; inactivation of DAF-16 reverses themetabolic defects caused by lack of insulin signaling in C. elegans. Wehave found 3 human DAF-16 orthologues: FKHRL1, FKHR, and AFX. Ourmolecular genetic analysis strongly suggests that the activity of thesetranscription factors is strongly coupled to insulin signaling and thatdrug-induced inhibition of one or all of these transcription factorsameliorates diabetic disease. As discussed in more detail below, we havedeveloped screening strategies to identify such drugs.

[0010] We have also found that the C. elegans daf-7, daf-1, daf-4,daf-8, daf-14, and daf-3 genes encode neuroendocrine/target tissue TGF-βtype signal transduction molecules that genetically interact with theinsulin signaling pathway. Similarly, we have shown that the metabolicdefects caused by lack of neuroendocrine TGF-p signals can be reversedby inactivation of the DAF-3 transcription factor. Finally, we havefound that another C. elegans gene, daf-18, the homologue of themammalian PTEN lipid phosphatase gene, also functions in the DAF-2signaling pathway.

[0011] Together, this evidence indicates that the DAF-16, DAF-3, DAF-8,and DAF-14 transcriptional outputs of these converging signalingpathways regulate metabolism. In addition, these discoveries alsoindicate that insulin and TGF-β-like signals are integrated in humans toregulate metabolism, and that the homologues of other DAF proteins arelikely to be defective or down regulated in human diabetic pedigrees aswell as obesity induced diabetes. These results therefore indicate thatthe C. elegans daf genes are excellent candidate genes and proteins forhuman disease associated with glucose intolerance, e.g., diabetes,obesity, and atherosclerosis. Our findings indicate that the humanhomologues of these daf genes and proteins mediate insulin signaling innormal people and may be defective or mis-regulated in diabetics.Moreover, our findings indicate that there are at least two classes oftype II diabetics: those with defects in the TGF-β signaling genes, andthose with defects in insulin signaling genes. Below we describeexemplary sequence and functional characteristics of the humanhomologues of the daf genes.

[0012] The discovery of converging DAF-7 and DAF-2 insulin-likesignaling indicates that many cases of obesity-induced andgenetically-induced diabetes (and obesity) may be treated byadministration of a human DAF-7 polypeptide.

[0013] The discovery that defects in the TGF-β signaling pathway can besuppressed by decreases in DAF-3 pathway activity and that defects inthe insulin pathway can be suppressed by decreases in DAF-16 activityhighlight the utility of transcriptional regulatory DAF proteins in drugdevelopment; in particular, drugs that inhibit the activity of theseproteins are useful for reversing the effects of obesity-induced orgenetically-induced defects in DAF-7 TGF-p type or insulin signaling.

[0014] In one aspect, the invention features a substantially purepreparation of a DAF-2 polypeptide, which can be derived from an animal(for example, a mammal, such as a human, or an invertebrate, such as C.elegans). In preferred embodiments, the DAF-2 polypeptide has insulinreceptor (InR) activity, insulin receptor related activity, insulin-likegrowth factor receptor (IGF-1) receptor activity, or a combination ofthese activities.

[0015] The invention also features isolated DNA encoding a DAF-2polypeptide. This isolated DNA can have a nucleotide sequence thatincludes, for example, the nucleotide sequence of the daf-2 gene shownin FIG. 2B. This isolated DNA can also, in preferred embodiments,complement a daf-2 mutation in C. elegans, an InR mutation in a mouse,or an IGF-1 receptor mutation in a mouse.

[0016] The isolated DNA encoding a DAF-2 polypeptide can be included ina vector, such as a vector that is capable of directing the expressionof the protein encoded by the DNA in a vector-containing cell. Theisolated DNA in the vector can be operatively linked to a promoter, forexample, a promoter selected from the group consisting of daf-2, age-1,daf-16, daf-1, daf-4, daf-3, and akt promoters. The isolated DNAencoding a DAF-2 polypeptide, or a vector including this DNA, can becontained in a cell, such as a bacterial, mammalian, or nematode cell.

[0017] Also included in the invention is a method of producing arecombinant DAF-2 polypeptide, and a DAF-2 polypeptide produced by thismethod. This method involves (a) providing a cell transformed withisolated DNA that (i) encodes a DAF-2 polypeptide, and (ii) ispositioned for expression in the cell, under conditions for expressingthe isolated DNA, and (b) isolating the recombinant DAF-2 polypeptide.

[0018] A substantially pure antibody, such as a monoclonal or polyclonalantibody, that specifically recognizes and binds a DAF-2 polypeptide isalso included in the invention.

[0019] The invention also features a method of detecting a gene, or aportion of a gene, that is found in a human cell and has sequenceidentity to the daf-2 sequence of FIG. 2B. In this method, isolated DNAencoding a DAF-2 polypeptide, a portion of such DNA greater than about12 residues in length, or a degenerate oligonucleotide corresponding toSEQ ID NOS: 33, 34, 79, 80, 81, 82, 83, or 84, is contacted with apreparation of DNA from the human cell under hybridization conditionsthat provide detection of DNA sequences having about 70% or greaternucleic acid sequence identity to the daf-2 sequence of FIG. 2B. Thismethod can also include a step of testing the gene, or portion thereof,for the ability to functionally complement a C. elegans daf-2 mutant.

[0020] Another method included in the invention is a method of isolatinga gene, or a portion of a gene, that is found in a human cell and has atleast 90% nucleic acid sequence identity to a sequence encoding SEQ IDNOS: 33, 34, 79, 80, 81, 82, 83, or 84. This method involves (a)amplifying by PCR the human gene, or portion thereof, usingoligonucleotide primers that (i) are each greater than about 12 residuesin length, and (ii) each have regions of complementarity to opposite DNAstrands in a region of the nucleotide sequence of FIG. 2B, and (b)isolating the human gene, or portion thereof. This method can alsoinclude a step of testing the gene, or portion thereof, for the abilityto functionally complement a C. elegans daf-2 mutant.

[0021] In another aspect, the invention features a substantially purepreparation of a DAF-3 polypeptide, which can be derived from an animal(for example, a mammal, such as a human, or an invertebrate, such as C.elegans). In a preferred embodiment, the polypeptide is a SMAD protein.In other preferred embodiments, the polypeptide is capable of bindingand interacting with a nematode DAF-1, DAF-4, DAF-8, DAF-14, or DAF-16polypeptide.

[0022] The invention also features isolated DNA encoding a DAF-3polypeptide. This isolated DNA can have a sequence that includes, forexample, the nucleotide sequence of a daf-3 gene shown in FIGS. 11A,11B, or 11C. This isolated DNA can also, in preferred embodiments,complement a daf-3 mutation in C. elegans or complement a daf-3 knockoutmouse.

[0023] The isolated DNA encoding a DAF-3 polypeptide can be included ina vector, such as a vector that is capable of directing the expressionof the protein encoded by the DNA in a vector-containing cell. Theisolated DNA in the vector can be operatively linked to a promoter, forexample, a promoter selected from the group consisting of daf-3, daf-4,daf-16, daf-2, age-1, and akt promoters. The isolated DNA encoding aDAF-3 polypeptide, or a vector including this DNA, can be contained in acell, such as a bacterial, mammalian, or nematode cell.

[0024] Also included in the invention is a method of producing arecombinant DAF-3 polypeptide, and a DAF-3 polypeptide produced by thismethod. This method involves (a) providing a cell transformed withisolated DNA that (i) encodes a DAF-3 polypeptide, and (ii) ispositioned for expression in the cell, under conditions for expressingthe isolated DNA, and (b) isolating the recombinant DAF-3 polypeptide.

[0025] A substantially pure antibody, such as a monoclonal or polyclonalantibody, that specifically recognizes and binds a DAF-3 polypeptide isalso included in the invention.

[0026] The invention also features a method of detecting a gene, or aportion of a gene, that is found in a human cell and has sequenceidentity to any of the daf-3 sequences of FIGS. 11A, 11B, or 11C. Inthis method, isolated DNA encoding a DAF-3 polypeptide, a portion ofsuch DNA that is greater than about 12 residues in length, or adegenerate oligonucleotide corresponding to SEQ ID NOS: 35, 36, or 85,is contacted with a preparation of DNA from the human cell underhybridization conditions that provide detection of DNA sequences havingabout 70% or greater nucleic acid sequence identity to any of the daf-3sequences of FIGS. 11A, 11B, or 11C. This method can also include a stepof testing the gene, or portion thereof, for the ability to functionallycomplement a C. elegans daf-3 mutant.

[0027] Another method included in the invention is a method of isolatinga gene, or a portion thereof, that is found in a human cell and has atleast 90% nucleic acid sequence identity to a sequence encoding SEQ IDNOS: 35, 36, or 85. This method includes (a) amplifying by PCR the humangene, or portion thereof, using oligonucleotide primers that (i) areeach greater than about 12 residues in length, and (ii) each haveregions of complementarity to opposite DNA strands in a region of any ofthe nucleotide sequences of FIGS. 11A, 11B, or 11C, and (b) isolatingthe human gene, or portion thereof. This method can also include a stepof testing the gene, or portion thereof, for the ability to functionallycomplement a C. elegans daf-3 mutant.

[0028] In yet another aspect, the invention features a substantiallypure preparation of DAF-16 polypeptide, which can be derived from ananimal (for example, a mammal, such as a human, or an invertebrate, suchas C. elegans). In a preferred embodiment, the polypeptide is a forkheadtranscription factor that binds DNA. In other preferred embodiments, thepolypeptide is capable of interacting with a polypeptide selected fromthe group consisting of DAF-3, DAF-8, and DAF-14.

[0029] The invention also features isolated DNA encoding a DAF-16polypeptide. This isolated DNA can have a sequence that includes, forexample, the sequence of the daf-16 gene shown in FIGS. 13A or 13B. Thisisolated DNA can also, in preferred embodiments, complement a daf-16mutation in C. elegans, or complement an FKHR, FKHRL1, or AFX mutationin a mouse.

[0030] The isolated DNA encoding a DAF-16 polypeptide can be included ina vector, such as a vector that is capable of directing the expressionof the protein encoded by the DNA in a vector-containing cell. Theisolated DNA in the vector can be operatively linked to a promoter, forexample, a promoter selected from the group consisting of daf-2, age-1,daf-16, daf-3, daf-4, and akt promoters. The isolated DNA encoding aDAF-16 polypeptide, or a vector containing this DNA, can be contained ina cell, such as a bacterial, mammalian, or nematode cell.

[0031] Also included in the invention is a method for producing arecombinant DAF-16 polypeptide, and a DAF-16 polypeptide produced bythis method. This method involves (a) providing a cell transformed withpurified DNA that (i) encodes a DAF-16 polypeptide, and (ii) ispositioned for expression in the cell, under conditions for expressingthe isolated DNA, and (b) isolating the recombinant DAF-16 polypeptide.

[0032] A substantially pure antibody, such as a monoclonal or polyclonalantibody, that specifically recognizes and binds a DAF-16 polypeptide isalso included in the invention.

[0033] The invention also features a method of detecting a gene, or aportion of a gene, that is found in a human cell and has sequenceidentity to the daf-16 sequence of FIGS. 13A or 13B. In this method,isolated DNA encoding a DAF-16 polypeptide, a portion of such DNA thatis greater than about 12 residues in length, or a degenerateoligonucleotide corresponding to SEQ ID NO: 54, 55, 56, or 57, iscontacted with a preparation of DNA from the human cell underhybridization conditions that provide detection of DNA sequences havingabout 70% or greater nucleic acid sequence identity to the daf-16sequence of FIGS. 13A or 13B. This method can also include a step oftesting the gene, or portion of the gene, for the ability tofunctionally complement a C. elegans daf-16 mutant.

[0034] Another method included in the invention is a method of isolatinga gene, or a portion of a gene, that is found in a human cell and has atleast 90% nucleic acid sequence identity to a sequence encoding SEQ IDNO: 54, 55, 56, or 57. This method involves (a) amplifying by PCR thehuman gene, or portion thereof, using oligonucleotide primers that (i)are each greater than about 12 residues in length, and (ii) each haveregions of complementarity to opposite DNA strands in a region of thenucleotide sequence of FIGS. 13A or 13B, and (b) isolating the humangene, or portion thereof. This method can also include a step of testingthe gene, or portion thereof, for the ability to functionally complementa C. elegans daf-16 mutant.

[0035] In another aspect, the invention features a method of determiningwhether a human gene is involved in an impaired glucose tolerancecondition (for example, a condition involving atherosclerosis) orobesity. This method involves (a) providing a nematode having a mutationin a daf or age gene, and (b) expressing in the nematode the human gene,which is operatively linked to a nematode gene promoter. Complementationof the daf or age mutation in the nematode is indicative of a human genethat is involved in an impaired glucose tolerance condition or obesity.In preferred embodiments, the nematode gene promoter is selected fromthe group consisting of daf-1, daf-3, daf-4, daf-2, age-1, and akt genepromoters. In other preferred embodiments, the daf mutation is selectedfrom the group consisting of daf-2, daf-3, daf-1, daf-4, daf-7, daf-8,daf-11, daf-12,daf-14, and daf-16 mutations. In yet another preferredembodiment, the mutation can also be found in the age-1 gene.

[0036] In further aspects, the invention features methods for diagnosingan impaired glucose tolerance condition (for example, Type II diabetesor a condition involving atherosclerosis), or a propensity for such acondition, in a patient. One such method includes analyzing the DNA ofthe patient to determine whether the DNA contains a mutation in a dafgene. Identification of such a mutation indicates that the patient hasan impaired glucose tolerance condition or a propensity for such acondition. The analysis in this method can be carried out, for example,by nucleotide sequencing or RFLP analysis. The analysis can also includeamplifying (for example, by PCR or reverse transcriptase PCR) the gene(for example, a human gene), or a fragment thereof, using primers, andanalyzing the amplified gene, or a fragment thereof, for the presence ofthe mutation. In preferred embodiments, the daf gene analyzed in thismethod is, for example, a daf-1, daf-2, daf-3 daf-4, daf-7, daf-8,daf-11, daf-12, daf-14, daf-16, akt-1, akt-2, pdk-1, or daf-18(PTEN)coding sequence, or the daf gene is FKHR, FKHRL1, or AFX.

[0037] Another method for diagnosing an impaired glucose tolerancecondition, such as Type II diabetes, or a propensity for such acondition, in a patient, includes analyzing the DNA of the patient todetermine whether the DNA contains a mutation in an age gene.Identification of such a mutation indicates that the patient has animpaired glucose tolerance condition or a propensity for such acondition. The analysis in this method can be carried out, for example,by nucleotide sequencing or RFLP analysis. The analysis can also includeamplifying (for example, by PCR or reverse transcriptase PCR) the gene(for example, a human gene), or a fragment thereof, using primers andanalyzing the amplified gene, or fragment thereof, for the presence ofthe mutation. In a preferred embodiment, the age gene is an age-1 codingsequence.

[0038] Yet another method for diagnosing an impaired glucose tolerancecondition, such as Type II diabetes or a condition that involvesatherosclerosis, or a propensity for such a condition, in a patient,includes analyzing the DNA of the patient to determine whether the DNAcontains a mutation in an akt gene. Identification of such a mutationindicates that the patient has an impaired glucose tolerance condition(for example, Type II diabetes) or a propensity for such a condition(for example, a pre-diabetic condition). The analysis in this method canbe carried out, for example, by nucleotide sequencing or RFLP analysis.The analysis can also include amplifying (for example, by PCR or reversetranscriptase PCR) the gene (for example, a human gene), or a fragmentthereof, using primers and analyzing the amplified gene, or fragmentthereof, for the presence of the mutation.

[0039] The invention also includes kits for use in the diagnosis of animpaired glucose tolerance condition, or a propensity for such acondition, in a patient. One such kit includes a PCR primercomplementary to a daf nucleic acid sequence and instructions fordiagnosing an impaired glucose tolerance condition or a propensity forsuch a condition. Another kit includes a PCR primer complementary to anage nucleic acid sequence and instructions for diagnosing an impairedglucose tolerance condition or a propensity for such a condition. Yetanother kit includes a PCR primer complementary to an akt nucleic acidsequence and instructions for diagnosing an impaired glucose tolerancecondition or a propensity for such a condition.

[0040] In another aspect, the invention features methods forameliorating or delaying the onset of an impaired glucose tolerancecondition (for example, Type II diabetes) in a patient. In one suchmethod a therapeutically effective amount of a DAF polypeptide (forexample, the human or nematode DAF-7 polypeptide) is administered to thepatient. In another method, which can be used, for example, in the caseof a condition involving atherosclerosis, a therapeutically effectiveamount of a compound that is capable of inhibiting the activity of aDAF-16 or DAF-3 polypeptide is administered to the patient. In yetanother method, a therapeutically effective amount of a compound thatactivates a DAF-1, DAF-4, DAF-8, DAF-11, or DAF-14 polypeptide isadministered to the patient.

[0041] Another aspect of the invention provides methods for amelioratingor preventing obesity (for example, obesity associated with Type IIdiabetes) in a patient. One such method involves administering to thepatient a therapeutically effective amount of a DAF polypeptide, such asa human or nematode DAF-7 polypeptide. Another such method involvesadministering to the patient a therapeutically effective amount of acompound that is capable of inhibiting the activity of a DAF-16, DAF-3,or DAF-18 (PTEN) polypeptide.

[0042] Yet another aspect of the invention features a transgenic,non-human animal, such as a mouse or a nematode, whose germ cells andsomatic cells contain a transgene coding for a mutant DAF polypeptide,for example, a mutant DAF polypeptide that is derived from a human. Inpreferred embodiments, the mutant DAF polypeptide is a DAF-1, DAF-2,DAF-3, DAF-4, DAF-7, DAF-8, DAF-11, DAF-12, DAF-14, DAF-16, or DAF-18(PTEN) polypeptide. In another preferred embodiment, the transgeneincludes a knockout mutation.

[0043] In a related aspect, the invention features a transgenic,non-human animal, such as a mouse or a nematode, whose germ cells andsomatic cells contain a transgene coding for a mutant AGE polypeptide,for example, a mutant AGE polypeptide derived from a human. In apreferred embodiment, the mutant AGE polypeptide is an AGE-1polypeptide. In another preferred embodiment, the transgene includes aknockout mutation.

[0044] In yet another aspect, the invention features a transgenic,non-human animal, such as a mouse or a nematode, whose germ cells andsomatic cells contain a transgene coding for a mutant AKT polypeptide,for example, a mutant AKT polypeptide derived from a human. In apreferred embodiment, the transgene includes a knockout mutation.

[0045] In related aspects, the invention features cells (for example,cells isolated from a mammal, such as mouse, human, or nematode cells)isolated from the transgenic animals described above.

[0046] The invention also includes methods for producing transgenic,non-human animals. For example, the invention includes a method forproducing a transgenic, non-human animal that lacks an endogenous dafgene and is capable of expressing a human DAF polypeptide. This methodinvolves (a) providing a transgenic, non-human animal whose germ cellsand somatic cells contain a mutation in a daf gene, and (b) introducinga transgene that (i) encodes a human DAF polypeptide, and (ii) iscapable of expressing the human polypeptide, into an embryonal cell ofthe non-human animal.

[0047] Another method included in the invention can be used forproducing a transgenic, non-human animal that lacks an endogenous agegene and is capable of expressing a human AGE polypeptide. This methodinvolves (a) providing a transgenic, non-human animal whose germ cellsand somatic cells contain a mutation in an age gene, and (b) introducinga transgene that (i) encodes a human AGE polypeptide, and (ii) iscapable of expressing the human polypeptide, into an embryonal cell ofthe non-human animal.

[0048] Similarly, the invention includes a method for producing atransgenic, non-human animal that lacks an endogenous akt gene and iscapable of expressing of expressing a human AKT polypeptide. This methodinvolves (a) providing a transgenic, non-human animal whose germ cellsand somatic cells contain a mutation in an akt gene, and (b) introducinga transgene that (i) encodes a human AKT polypeptide, and (ii) iscapable of expressing the human polypeptide, into an embryonal cell ofthe non-human animal.

[0049] Another aspect of the invention features a method of screeningfor a compound that increases the activity of a DAF polypeptide. Thismethod includes (a) exposing a non-human transgenic animal whose germcells and somatic cells contain a transgene coding for a mutant DAFpolypeptide to a candidate compound, and (b) determining the activity ofthe DAF polypeptide in the transgenic animal. An increase in DAFpolypeptide activity, as compared to untreated controls, is indicativeof a compound that is capable of increasing DAF polypeptide activity. Inpreferred embodiments, the compound can be used to treat an impairedglucose tolerance condition or obesity.

[0050] In a related aspect, the invention features a method of screeningfor a compound that decreases the activity of a DAF polypeptide. Thismethod includes (a) exposing a non-human transgenic animal whose germcells and somatic cells contain a transgene coding for a mutant DAFpolypeptide to a candidate compound, and (b) determining the activity ofthe DAF polypeptide in the transgenic animal. A decrease in DAFpolypeptide activity, as compared to untreated controls, is indicativeof a compound that is capable of decreasing DAF polypeptide activity. Inpreferred embodiments, the compound can be used to treat an impairedglucose tolerance condition, obesity, or atherosclerosis. In otherpreferred embodiments, the compound decreases the activity of DAF-3 orDAF-16.

[0051] In another aspect, the invention features a method of screeningfor a compound that increases the activity of an AGE polypeptide. Thismethod includes (a) exposing a non-human transgenic animal whose germcells and somatic cells contain a transgene coding for a mutant AGEpolypeptide to a candidate compound, and (b) determining the activity ofthe AGE polypeptide in the transgenic animal. An increase in AGEpolypeptide activity, as compared to untreated controls, is indicativeof a compound that is capable of increasing AGE polypeptide activity. Inpreferred embodiments, the compound can be used to treat an impairedglucose tolerance condition, obesity, or atherosclerosis.

[0052] In a related aspect, the invention features a method of screeningfor a compound that decreases the activity of a AGE polypeptide. Thismethod includes (a) exposing a non-human, transgenic animal whose germcells and somatic cells contain a transgene coding for a mutant AGEpolypeptide to a candidate compound, and (b) determining the activity ofthe AGE polypeptide in the transgenic animal. A decrease in AGEpolypeptide activity, as compared to untreated controls, is indicativeof a compound that is capable of decreasing AGE polypeptide activity. Inpreferred embodiments, the compound can be used to treat or delay aging.In another preferred embodiment, the AGE polypeptide is AGE-1.

[0053] In another aspect, the invention features a method of screeningfor a compound that increases the activity of an AKT polypeptide. Thismethod includes (a) exposing a transgenic, non-human animal whose germcells and somatic cells contain a transgene coding for a mutant AKTpolypeptide to a candidate compound, and (b) determining the activity ofthe AKT polypeptide in the transgenic animal. An increase in AKTpolypeptide activity, as compared to untreated controls, is indicativeof a compound that is capable of increasing AKT polypeptide activity. Inpreferred embodiments, the compound can be used to treat an impairedglucose tolerance condition, obesity, or atherosclerosis.

[0054] In a related aspect, the invention features a method of screeningfor a compound that decreases the activity of a AKT polypeptide. Thismethod includes (a) exposing a transgenic, non-human animal whose germcells and somatic cells contain a transgene coding for a mutant AKTpolypeptide to a candidate compound, and (b) determining the activity ofthe AKT polypeptide in the transgenic animal. A decrease in AKTpolypeptide activity, as compared to untreated controls, is indicativeof a compound that is capable of decreasing AKT polypeptide activity. Inpreferred embodiments, the compound can be used to treat or delay aging.

[0055] Also included in the invention is a method of screening for acompound that is capable of ameliorating or delaying an impaired glucosetolerance condition. This method involves (a) exposing a transgenic,non-human animal whose germ cells and somatic cells contain a transgenecoding for a mutant DAF, AGE, or AKT polypeptide to a candidatecompound, and (b) monitoring the blood glucose level of the animal. Acompound that promotes maintenance of a physiologically acceptable levelof blood glucose in the animal, as compared to untreated controls, isindicative of a compound that is capable of ameliorating or delaying animpaired glucose tolerance condition. In a preferred embodiment, thecompound can be used to treat Type II diabetes.

[0056] Another method of screening for a compound that is capable ofameliorating or delaying obesity is also included in the invention. Thismethod involves (a) exposing a transgenic, non-human animal whose germcells and somatic cells contain a transgene coding for a mutant DAF,AGE, or AKT polypeptide to a candidate compound, and (b) monitoring theadipose tissue of the animal. A compound that promotes maintenance of aphysiologically acceptable level of adipose tissue in the animal, ascompared to untreated controls, is indicative of a compound that iscapable of ameliorating or delaying obesity.

[0057] A related method of the invention can be used for screening for acompound that is capable of ameliorating or delaying atherosclerosis.This method involves (a) exposing a transgenic, non-human animal whosegerm cells and somatic cells contain a transgene coding for a mutantDAF, AGE, or AKT polypeptide to a candidate compound, and (b) monitoringthe adipose tissue of the animal. A compound that promotes maintenanceof a physiologically acceptable level of adipose tissue in the animal,as compared to untreated controls, is indicative of a compound that iscapable of ameliorating or delaying atherosclerosis.

[0058] In another aspect, the invention includes a method foridentifying a modulatory compound that is capable of decreasing theexpression of a daf gene. This method involves (a) providing a cellexpressing the daf gene, and (b) contacting the cell with a candidatecompound. A decrease in daf expression following contact with thecandidate compound identifies a modulatory compound. In preferredembodiments, the compound can be used to treat an impaired glucosetolerance condition or obesity. In other preferred embodiments, thecompound is capable of decreasing the expression of DAF-3 or DAF-16.This method can be carried out in an animal, such as a nematode.

[0059] In a related aspect, the invention includes a method for theidentification of a modulatory compound that is capable of increasingthe expression of a daf gene. This method involves (a) providing a cellexpressing the daf gene, and (b) contacting the cell with a candidatecompound. An increase in daf expression following contact with thecandidate compound identifies a modulatory compound. In preferredembodiments, the compound can be used to treat an impaired glucosetolerance condition or obesity. In other preferred embodiments, thecompound is capable of increasing expression of DAF-1, DAF-2, DAF-4,DAF-7, DAF-8, DAF-11, or DAF-14. This method can be carried out in ananimal, such as a nematode.

[0060] In another aspect, the invention includes a method for theidentification of a modulatory compound that is capable of increasingthe expression of an age-1 gene. This method involves (a) providing acell expressing the age-1 gene, and (b) contacting the cell with acandidate compound. An increase in age-1 expression following contactwith the candidate compound identifies a modulatory compound. Inpreferred embodiments, the compound is capable of treating an impairedglucose tolerance condition or obesity. This method can be carried outin an animal, such as a nematode.

[0061] In another aspect, the invention provides a method foridentification of a compound that is capable of ameliorating or delayingan impaired glucose tolerance condition. This method involves (a)providing a dauer larvae including a mutation in a daf gene, and (b)contacting the dauer larvae with a compound. Release from the dauerlarval state is an indication that the compound is capable ofameliorating or delaying an impaired glucose tolerance condition. In apreferred embodiment, the dauer larvae carries a daf-2 mutation. Inanother preferred embodiment, the dauer larvae is from C. elegans. Inyet another embodiment, the impaired glucose tolerance conditioninvolves obesity or atherosclerosis.

[0062] In a related aspect, the invention provides a method foridentification of a compound that is capable of ameliorating or delayingan impaired glucose tolerance condition. This method involves (a)providing a dauer larvae including a mutation in an age-I gene, and (b)contacting the dauer larvae with a compound. Release from the dauerlarval state is an indication that the compound is capable ofameliorating or delaying an impaired glucose tolerance condition. In apreferred embodiment, the dauer larvae carries an age-1 mutation. Inanother preferred embodiment, the dauer larvae is from C. elegans. Inyet another preferred embodiment, the impaired glucose tolerancecondition involves obesity or atherosclerosis.

[0063] In another related aspect, the invention provides a method forthe identification of a compound that is capable of ameliorating ordelaying an impaired glucose tolerance condition. This method involves(a) providing a dauer larvae including a mutation in an akt gene, and(b) contacting the dauer larvae with a compound. Release from the dauerlarval state is an indication that the compound is capable ofameliorating or delaying an impaired glucose tolerance condition. In apreferred embodiment, the dauer larvae is from C. elegans. In anotherpreferred embodiment, the impaired glucose tolerance condition involvesobesity or atherosclerosis.

[0064] In another aspect, the invention provides a method for theidentification of a compound for ameliorating or delaying an impairedglucose tolerance condition. This method involves (a) combining PIP3 andan AKT polypeptide in the presence and absence of a compound underconditions that allow PIP3 :AKT complex formation, (b) identifying acompound that is capable of decreasing the formation of the PIP3:AKTcomplex, and (c) determining whether the compound identified in step (b)is capable of increasing AKT activity. An increase in AKT kinaseactivity is taken as an indication of a compound useful for amelioratingor delaying an impaired glucose tolerance condition.

[0065] In yet another aspect, the invention provides a method for theidentification of a compound for ameliorating or delaying an impairedglucose tolerance condition. This method involves (a) providing a daf-7,daf-3 mutant nematode, (b) expressing in the cells of the nematode amammalian DAF-3 polypeptide, whereby the nematode forms a dauer larva,and (c) contacting the dauer larva with a compound. A release from thedauer larval state is an indication that the compound is capable ofameliorating or delaying the glucose intolerance condition.

[0066] In a further aspect, the invention features a method for theidentification of a compound for ameliorating or delaying an impairedglucose tolerance condition. This method involves (a) providing a daf-2,daf-16 mutant nematode, (b) expressing in the cells of the nematode amammalian DAF-16 polypeptide, whereby the nematode forms a dauer larva,and (c) contacting the dauer larva with a compound. A release from thedauer larval state is an indication that the compound is capable ofameliorating or delaying the glucose intolerance condition.

[0067] In yet another aspect, the invention features insulin-likemolecules and their use as diagnostic and therapeutic reagents.

[0068] As used herein, by a “DAF” polypeptide is meant a polypeptidethat functionally complements a C. elegans daf mutation and/or that hasat least 60%, preferably 75%, and more preferably 90% amino acidsequence identity to a 100 amino acid region (and preferably a conserveddomain) of a C. elegans DAF polypeptide. Complementation may be assayedin an organism (for example, in a nematode) or in a cell culture system.Complementation may be partial or complete, but must provide adetectable increase in function (as described herein). DAF polypeptidesare encoded by “DAF” genes or nucleic acid sequences.

[0069] By an “AGE” polypeptide is meant a polypeptide that functionallycomplements a C. elegans age mutation and/or that has at least 60%,preferably 75%, and more preferably 90% amino acid sequence identity toa 100 amino acid region (and preferably a conserved domain) of a C.elegans AGE polypeptide. Complementation may be assayed in an organism(for example, in a nematode) or in a cell culture system.Complementation may be partial or complete, but must provide adetectable increase in a known AGE function. AGE polypeptides areencoded by “AGE” genes or nucleic acid sequences.

[0070] As used herein, by an “AKT” polypeptide is meant a polypeptidethat functionally complements a C. elegans akt mutation and/or thatpossess at least 64% amino acid sequence identity to SEQ ID NO: 60, atleast 71% amino acid sequence identity to SEQ ID NO: 61, at least 79%amino acid sequence identity to SEQ ID NO: 62, at least 63% amino acidsequence identity to SEQ ID NO: 63, at least 48% amino acid sequenceidentity to SEQ ID NO: 64, at least 70% amino acid sequence identity toSEQ ID NO: 65, at least 64% amino acid sequence identity to SEQ ID NO:66, at least 67% amino acid sequence identity to SEQ ID NO: 67, or acombination thereof. Complementation may be assayed in an organism (forexample, in a nematode) or in a cell culture system. Complementation maybe partial or complete, but must provide a detectable increase in aknown AKT function. AKT polypeptides are encoded by “AKT” genes ornucleic acid sequences.

[0071] By a “DAF-2 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-2 mutation and/or that possesses atleast 61% amino acid sequence identity to SEQ ID NO: 33, at least 31%amino acid sequence identity to SEQ ID NO: 34, at least 43% amino acidsequence identity to SEQ ID NO: 79, at least 35% amino acid sequenceidentity to SEQ ID NO: 80, at least 35% amino acid sequence identity toSEQ ID NO: 81, at least 48% amino acid sequence identity to SEQ ID NO:82, at least 43% amino acid sequence identity to SEQ ID NO: 83, at least40% amino acid sequence identity to SEQ ID NO: 84, or a combinationthereof. Preferably, a DAF-2 polypeptide includes an aspartic acid, aproline, a proline, a serine, an alanine, an aspartic acid, a cysteine,or a proline at amino acid positions corresponding to C. elegans DAF-2amino acids 1252, 1312, 1343, 347, 451, 458, 526, 279, and 348respectively, or a combination thereof.

[0072] By a “DAF-3 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-3 mutation and/or that possesses atleast 60% amino acid sequence identity to SEQ ID NO: 35, at least 38%amino acid sequence identity to SEQ ID NO: 36, at least 47% amino acidsequence identity to SEQ ID NO: 85, or a combination thereof.Preferably, a DAF-3 polypeptide includes a proline or a glycine at aminoacid positions corresponding to C. elegans daf-3 amino acids atpositions 200 (proline) and/or 620 (glycine) in FIG. 12A, respectively,or a combination thereof. For example, the polypeptide may include aproline in the motif GRKGFPHV SEQ ID NO: 200) or a glycine in the motifRXXIXXG (where X is any amino acid) (SEQ ID NO: 201).

[0073] By a “DAF-16 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-16 mutation and/or that possesses atleast 71% amino acid sequence identity to SEQ ID NO: 54, at least 35%amino acid sequence identity to SEQ ID NO: 55, at least 65% amino acidsequence identity to SEQ ID NO: 56, at least 53% amino acid sequenceidentity to SEQ ID NO: 57, or a combination thereof. In addition, aDAF-16 polypeptide preferably includes a serine residue in the conservedmotif WKNSIRH (SEQ ID NO: 59).

[0074] By a “DAF-7 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-7 mutation and/or that possesses atleast 29% amino acid sequence identity to SEQ ID NO: 26, at least 66%amino acid sequence identity to SEQ ID NO: 27, at least 45% amino acidsequence identity to SEQ ID NO: 28, at least 33% amino acid sequenceidentity to SEQ ID NO: 29, at least 56% amino acid sequence identity toSEQ ID NO: 30, at least 75% sequence identity to SEQ ID No: 51, or acombination thereof. Preferably, a DAF-7 polypeptide includes a prolineor a glycine at amino acid positions corresponding to C. elegans daf-7amino acids 271 and 280, respectively, or a combination thereof.

[0075] By a “DAF-8 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-8 mutation and/or that possesses atleast 46% amino acid sequence identity to SEQ ID NO: 23, at least 45%amino acid sequence identity to SEQ ID NO: 24, at least 36% amino acidsequence identity to SEQ ID NO: 25, or a combination thereof.

[0076] By an “AGE-1 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans age-1 mutation (previously known as adaf-23 mutation) and/or that possesses at least 40% amino acid sequenceidentity to SEQ ID NO: 17, at least 45% amino acid sequence identity toSEQ ID NO: 18, at least 30% amino acid sequence identity to SEQ ID NO:19, at least 24% amino acid sequence identity to SEQ ID NO: 38, or acombination thereof. Preferably, an AGE-I polypeptide includes analanine at amino acid positions corresponding to C. elegans age-1 aminoacids 845.

[0077] By a “DAF-1 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-1 mutation and/or that possesses atleast 45% amino acid sequence identity to SEQ ID NO: 13, at least 35%amino acid sequence identity to SEQ ID NO: 14, at least 65% amino acidsequence identity to SEQ ID NO: 15, at least 25% amino acid sequenceidentity to SEQ ID NO: 16, or a combination thereof. Preferably, a DAF-1polypeptide includes a proline at the amino acid position correspondingto C. elegans DAF-1 amino acid 546.

[0078] By a “DAF-4 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-4 mutation and/or that possesses atleast 45% amino acid sequence identity to SEQ ID NO: 20, at least 40%amino acid sequence identity to SEQ ID NO: 21, at least 44% amino acidsequence identity to SEQ ID NO: 22, or a combination thereof.

[0079] By a “DAF-11 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-11 mutation and/or that possesses atleast 40% amino acid sequence identity to SEQ ID NO: 75, at least 43%amino acid sequence identity to SEQ ID NO: 76, at least 36% amino acidsequence identity to SEQ ID NO: 77, at least 65% amino acid sequenceidentity to SEQ ID NO: 78, or a combination thereof.

[0080] By a “DAF-12 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-12 mutation and/or that possesses atleast 42% amino acid sequence identity to SEQ ID NO: 72, at least 58%amino acid sequence identity to SEQ ID NO: 73, at least 34% amino acidsequence identity to SEQ ID NO: 74, or a combination thereof.

[0081] By a “DAF-14 polypeptide” is meant a polypeptide that complements(as defined above) a C. elegans daf-14 mutation and/or that possesses atleast 48% amino acid sequence identity to SEQ ID NO: 68, at least 37%amino acid sequence identity to SEQ ID NO: 69, at least 48% amino acidsequence identity to SEQ ID NO: 70, at least 37% amino acid sequenceidentity to SEQ ID NO: 71, or a combination thereof.

[0082] By a “PTEN” polypeptide is meant a PTEN lipid phosphatase fromany animal. Preferably, this animal is a mammal and, most preferably, ahuman. This polypeptide is also referred to as MMAC1 and TEP1.

[0083] By “insulin receptor activity” is meant any activity exhibited byan insulin receptor and measured by either (i) activation of insulinreceptor substrate-1 (IRS-1) phosphorylation and recruitment of PI-3kinase, (ii) activation of glucose transporter (Glut 4) fusion with acellular membrane and concomitant glucose uptake, or (iii) activation ofglycogen and/or fat synthesis and concomitant inhibition ofgluconeogenesis or lipolysis or both.

[0084] By “insulin receptor related activity” is meant any activity notdirectly attributable to the insulin receptor but that is measured by anactivation of IRS-1 phosphorylation and recruitment of PI3-kinase.

[0085] By “IGF-1 receptor activity” is meant any activity exhibited byan insulin-like growth factor-1 receptor and measured by (i) activationof IRS-1 phosphorylation and recruitment of PI-3 kinase, (ii) activationof cell division in NIH3T3 cells (e.g., as described in Gronborg et al.,J. Biol. Chem. 268: 23435-23440, 1993), or (iii) activation of bonegrowth in, for example, the mouse model.

[0086] By “SMAD protein” is meant a protein that is capable of couplingto TGF-β type ser/thr receptors. Smad proteins typically contain a smadconserved motif as described by Derynk et al. (Cell 87: 173, 1996).Exemplary smad proteins include, without limitation, DAF-3, MADR-2, MAD,DPC-4, and Sma-2.

[0087] By “AKT activity” is meant any activity exhibited by an AKTpolypeptide and measured by phosphatidylinositol-regulated increases inserine phosphorylation of GSK-3, DAF-16, AFX, FKHR, or FKHRL1, oractivation of non-dauer growth in C. elegans akt mutants.

[0088] By “impaired glucose tolerance condition” is meant any conditionin which blood sugar levels are inappropriately elevated or lack normalmetabolic regulation. Examples of such conditions include, withoutlimitation, Type I diabetes, Type II diabetes, and gestational diabetes,and may be associated with obesity and atherosclerosis.

[0089] By “protein” or “polypeptide” is meant any chain of amino acids,regardless of length or post-translational modification (e.g.,glycosylation or phosphorylation).

[0090] By “substantially pure” is meant a preparation which is at least60% by weight (dry weight) the compound of interest, e.g., any of thepolypeptides of the invention such as the DAF-2, DAF-3, or DAF-16polypeptides or DAF-2, DAF-3, or DAF-16-specific antibodies. Preferablythe preparation is at least 75%, more preferably at least 90%, and mostpreferably at least 99%, by weight the compound of interest. Purity canbe measured by any appropriate method, e.g., column chromatography,polyacrylamide gel electrophoresis, or HPLC analysis.

[0091] By “isolated DNA” is meant DNA that is not immediately contiguouswith both of the coding sequences with which it is immediatelycontiguous (one on the 5′ end and one on the 3′ end) in thenaturally-occurring genome of the organism from which it is derived. Theterm therefore includes, for example, a recombinant DNA which isincorporated into a vector; into an autonomously replicating plasmid orvirus; or into the genomic DNA of a prokaryote or eukaryote, or whichexists as a separate molecule (e.g., a cDNA or a genomic DNA fragmentproduced by PCR or restriction endonuclease treatment) independent ofother sequences. It also includes a recombinant DNA which is part of ahybrid gene encoding additional polypeptide sequence.

[0092] By a “substantially identical” polypeptide sequence is meant anamino acid sequence which differs only by conservative amino acidsubstitutions, for example, substitution of one amino acid for anotherof the same class (e.g., valine for glycine, arginine for lysine, etc.)or by one or more non-conservative substitutions, deletions, orinsertions located at positions of the amino acid sequence which do notdestroy the function of the polypeptide (assayed, e.g., as describedherein).

[0093] Preferably, such a sequence is at least 75%, more preferably 85%,and most preferably 95% identical at the amino acid level to thesequence used for comparison.

[0094] Homology is typically measured using sequence analysis software(e.g., Sequence Analysis Software Package of the Genetics ComputerGroup, University of Wisconsin Biotechnology Center, 1710 UniversityAvenue, Madison, Wis. 53705 or BLAST software available from theNational Library of Medicine). Examples of useful software include theprograms, Pileup and PrettyBox. Such software matches similar sequencesby assigning degrees of homology to various substitutions, deletions,substitutions, and other modifications. Conservative substitutionstypically include substitutions within the following groups: glycine,alanine; valine, isoleucine, leucine; aspartic acid, glutamic acid,asparagine, glutamine; serine, threonine; lysine, arginine; andphenylalanine, tyrosine.

[0095] By a “substantially identical” nucleic acid is meant a nucleicacid sequence which encodes a polypeptide differing only by conservativeamino acid substitutions, for example, substitution of one amino acidfor another of the same class (e.g., valine for glycine, arginine forlysine, etc.) or by one or more non-conservative substitutions,deletions, or insertions located at positions of the amino acid sequencewhich do not destroy the function of the polypeptide (assayed, e.g., asdescribed herein). Preferably, the encoded sequence is at least 75%,more preferably 85%, and most preferably 95% identical at the amino acidlevel to the sequence of comparison. If nucleic acid sequences arecompared a “substantially identical” nucleic acid sequence is one whichis at least 85%, more preferably 90%, and most preferably 95% identicalto the sequence of comparison. The length of nucleic acid sequencecomparison will generally be at least 50 nucleotides, preferably atleast 60 nucleotides, more preferably at least 75 nucleotides, and mostpreferably 110 nucleotides. Again, homology is typically measured usingsequence analysis software (e.g., Sequence Analysis Software Package ofthe Genetics Computer Group, University of Wisconsin BiotechnologyCenter, 1710 University Avenue, Madison, Wis. 53705).

[0096] By “positioned for expression” is meant that the DNA molecule ispositioned adjacent to a DNA sequence which directs transcription andtranslation of the sequence (i.e., facilitates the production of any ofthe polypeptides disclosed herein including, but not limited to, DAF-2,DAF-3, and DAF-16 and any human homolog thereof).

[0097] By “purified antibody” is meant antibody which is at least 60%,by weight, free from the proteins and naturally-occurring organicmolecules with which it is naturally associated. Preferably, thepreparation is at least 75%, more preferably at least 90%, and mostpreferably at least 99%, by weight, antibody.

[0098] By “specifically binds” is meant an antibody which recognizes andbinds a polypeptide of the invention (e.g., DAF-2, DAF-3, and DAF-16)but which does not substantially recognize and bind other molecules in asample (e.g., a biological sample) which naturally includes apolypeptide of the invention. An antibody which “specifically binds”such a polypeptide is sufficient to detect protein product in such abiological sample using one or more of the standard immunologicaltechniques available to those in the art (for example, Western blottingor immunoprecipitation).

[0099] By “immunological methods” is meant any assay involvingantibody-based detection techniques including, without limitation,Western blotting, immunoprecipitation, and direct and competitive ELISAand RIA techniques.

[0100] By “means for detecting” is meant any one or a series ofcomponents that sufficiently indicate a detection event of interest.Such means involve at least one label that may be assayed or observed,including, without limitation, radioactive, fluorescent, andchemiluminescent labels.

[0101] By “hybridization techniques” is meant any detection assayinvolving specific interactions (based on complementarity) betweennucleic acid strands, including DNA-DNA, RNA-RNA, and DNA-RNAinteractions. Such hybridization techniques may, if desired, include aPCR amplification step.

[0102] By a “modulatory compound”, as used herein, is meant any compoundcapable of either decreasing DAF-3, DAF-16, or DAF-18 (PTEN) expression(i.e., at the level of transcription, translation, or post-translation)or decreasing DAF-3, DAF-16, or DAF-18 (PTEN) protein levels oractivity. Also included are compounds capable of either increasingDAF-1, DAF-2, DAF-4, DAF-8, DAF-7, DAF-11, DAF-14, AGE-1, AKT, or PDK1expression (i.e., at the level of transcription, translation, orpost-translation) or increasing DAF-1, DAF-2, DAF-4, DAF-8, DAF-7,DAF-11, DAF-14, AGE-1, AKT, or PDK-1 protein levels or theircorresponding activities.

[0103] By “complementation” is meant an improvement of a genetic defector mutation. In one example, complementation of a genetic defect in adaf, age, or akt gene can be carried out by providing the wild-type daf,age, or akt genes, respectively. Complementation is generallyaccomplished by expressing the wild-type version of the protein in ahost cell or animal bearing a mutant or inactive version of the gene.

[0104] Other features and advantages of the invention will be apparentfrom the following detailed description thereof, and from the claims.

DETAILED DESCRIPTION

[0105] The drawings will first be described.

DRAWINGS

[0106]FIG. 1 shows the genetic and physical map of C. elegans daf-2. Thetop panel shows the genetic map of daf-2. daf-2 maps on the left arm ofchromosome III 11.4 map units to the right of dpy-1 and 1.6 map units tothe left of ben-1 (ACeDB). The middle panel shows the physical map ofdaf-2. daf-2 maps between mgP34 and mgP44 in a region not covered bycosmid clones but covered by YAC Y53G8. Cosmids from the approximatedaf-2 genetic location detect RFLPs between C. elegans strains BristolN2 and Bergerac RC301. mgP31 on cosmid T21A6 is a HindIII RFLP: 5.3 kbin Bristol, 4.5 kb in RC301. mgP33 on cosmid T02B2 is a HindIII RFLP: 9kb in Bristol, 8 kb in RC301. mgP34 on cosmid R10F2 is an EcoRI RFLP:4.1 and 2.8 kb in Bristol, 3.6 kb in RC301. mgP44 on cosmid R07G11 is acomplex EcoRI RFLP: 2.9 kb, 2.4 kb, 1.9 kb and 1.7 kb in Bristol; 3.6kb, 2.5 kb and 1.6 kb in RC301. mgP35 on cosmid T10D5 is a StyI RFLP:5.4 kb in Bristol, 5.8 kb in RC301. mgP32 on cosmid C42B8 is a StyIRFLP: 2.8 kb in Bristol; 2.9 kb in RC301. mgP48 detected with daf-2probe (nt 1277-2126 and 3747-4650) is a HindIII RFLP: 4.3 kb and 7 kb inBristol and 4.1 kb and 6.2 kb in RC301. Thirty-one out of thirty-threeDpy-non-Daf recombinants carry the RC301 allele of mgP34 whereas allthirty-three recombinants in this interval carry the RC301 allele ofmgP44, mapping daf-2 0.69 map units to the right of mgP34 and to theleft of mgP44. Fourteen out of twenty-four Ben-non-Daf recombinantscarry the RC301 mgP44 allele whereas all of these recombinants carry theRC301 allele of mgP34, mapping daf-2 0.66 map units to the left ofmgP44.

[0107] Y53G8 YAC DNA was isolated from CHEF gels as described in Ausubelet al. (Current Protocols in Molecular Biology, John Wiley & Sons, NewYork, N.Y., 1990), labeled, and shown to hybridize to multiplerestriction fragments from cosmids bearing mgP34 and mgP44. A probe fromthe insulin receptor homolog on Y53G8 detects the mgP48 RFLP between N2and RC301. All thirty-three Dpy-non-Daf and all twenty-four Ben-non-Dafrecombinants described above carry the RC301 allele of mgP48, indicatingthat daf-2 could not be separated from this insulin receptor gene bythese fifty-seven recombination events in a thirteen map unit interval.

[0108] The bottom panel shows the structure of daf-2 cDNA. The daf-2cDNA was amplified from a cDNA library constructed according to standardmethods by PCR using internal primers derived from the genomic shotgunsequences, vector sequence primers (for 3′ end) and an SL1 transsplicedleader PCR primer (M. Krause, In: Methods Cell Biol., vol. 48, pp.483-512, H. F. Epstein and D. C. Shakes, eds., Academic Press, SanDiego, Calif., 1995). To isolate a cDNA, pooled plasmid DNA from 106clones of a 107 clone complexity cDNA library was used as a PCRtemplate. To obtain a daf-2 cDNA 3′ end, daf-2 internal primerCGCTACGGCAAAAAAGTGAA (SEQ ID NO: 1) in the kinase domain and a cloningvector primer CGATGATGAAGATACCCC (SEQ ID NO: 2) were used in a nestedPCR reaction with adjacent internal primers. For the cDNA fragment fromthe ligand-binding domain to the kinase domain, PCR was carried out withTGATGCGAACGGCGATCGAT (SEQ ID NO: 3) and ACGCTGGATCATCTACATTA (SEQ ID NO:4) primers. For the daf-2 5′ end, SL1 primer GGTTTAATTACCCAAGTTTGAG (SEQID NO: 5) and one internal daf-2 primer GCTCACGGGTCACACAACGA (SEQ ID NO:6) were used in a nested PCR reaction with adjacent internal primers.Using PCR to amplify genomic DNA from a set of 20 daf-2 mutants, wesearched for daf-2 mutations in a 0.8 kb region of the ligand bindingdomain and in a 0.9 kb region of the kinase domain. For sequencing theligand-binding domain PCR primers TGATGCGAACGGCGATCGAT (SEQ ID NO: 7)and TGAGGGCCAACTAAAGAAGAC (SEQ ID NO: 8) were used. In the kinase domainprimers CGCTACGGCAAAAAAGTGAA (SEQ ID NO: 9) and GACGATCCCGAGGTGAGTAT(SEQ ID NO: 10) were used. The presence of an SL1 spliced leadersequence indicates a full length daf-2 cDNA. The predicted ORF is shownas a box; 5′ and 3′ UTRs are shown as thick bars. The predicted DAF-2initiator methionine at base 486 is preceded by an in frame stop codon63 bases upstream. The predicted DAF-2 stop codon is found at base 5658.No consensus polyadenylation signal was found in the cDNA nor in genomicshotgun sequence #00678, which extends 302 bp further downstream. Theinitial insulin receptor homolog shotgun sequences are shown as thinbars above the box.

[0109] Introns were detected by a combination of in silico genomic andcDNA sequence comparison, and by comparison of PCR products derived fromcDNA and genomic DNA templates. The open triangles over a vertical barindicate positions of the detected exon/intron boundaries. All theintron donor sites have GT consensus and the acceptor sites have AGconsensus (Krause, 1995 supra). The triangles without a vertical barindicate the approximate intron locations determined by comparison ofPCR products using genomic DNA or cDNA as a template. Intron lengthswere estimated by comparison of the PCR product size using cDNA orgenomic DNA templates. Genomic regions corresponding to some of theintrons could not be PCR amplified suggesting that these introns arelong. The minimum daf-2 gene size based on this analysis is 33 kb.

[0110]FIG. 2A shows the predicted C. elegans DAF-2 amino acid sequence.The predicted cysteine-rich region (amino acids 207-372) and tyrosinekinase domain (amino acids 1124-1398) are boxed. The signal peptide(amino acids 1-20), proteolysis site (amino acids 806-809),transmembrane domain (amino acids 1062-1085), and PTB binding motif inthe juxtamembrane region (NPEY, amino acids 1103-1106) are underlined.Three DAF-2 tyrosine residues, Y1293, Y1296 and Y1297, in the regioncorresponding to the insulin receptor kinase Y1158 to Y1163 activationloop are likely to be autophosphorylated, based on the predictedsimilarity between the DAF-2 and insulin receptor phosphorylationtargets (FIG. 2B). Another likely target for DAF-2 autophosphorylationis the Y1106 NPEY motif located in the region corresponding to theinsulin receptor juxtamembrane region NPEY motif (at Y972), that hasbeen shown to mediate IRS-1 binding via its PTB domain to the insulinreceptor (White and Kahn, J. Biol. Chem. 269: 1-4, 1994). While DAF-2bears one YXXM motif implicated in coupling to PI 3-kinase, mammalianIRS-1 and Drosophila insulin receptor (Fernandez et al., EMBO J. 14:3373-3384, 1995) bear multiple YXXM motifs. Although no p85-like adaptorsubunit has yet been detected in the C. elegans database, the AGE-1homology to mammalian p 110 suggests the existence of a homologous oranalogous adaptor (Morris et al., Nature 382: 536-539, 1996). In theDAF-2 C-terminal domain, two other tyrosine residues may beautophosphorylated and bound to particular SH2-containing proteins:Y1678 binding to a PLC-g or SIP-2 homolog, and Y1686, perhaps binding toSEM-5 (FIG. 2A) (Songyang et al., Cell 72: 767-778, 1993). Whilemutations in, for example, ras and MAP kinase have not been identifiedin screens for dauer constitutive or dauer defective mutations, thesegeneral signaling pathway proteins may couple to DAF-2 as they couple toinsulin signaling in vertebrates (White and Kahn, J. Biol. Chem. 269:1-4, 1994). The predicted phosphotyrosine residues in juxtamembraneregion and the kinase domain activation loop are circled. In theextended C-terminal region, predicted phosphotyrosine residues are alsocircled and SH2-binding sites are underlined (see below).

[0111]FIG. 2B shows the cDNA encoding the C. elegans DAF-2.

[0112]FIG. 2C shows the amino acid comparison of C. elegans DAF-2 to thehuman insulin receptor and human IGF-I receptor (shown in parenthesis),and to the Drosophila insulin receptor homolog, with daf-2 and humaninsulin receptor mutations highlighted. Six daf-2 mutations map in theligand-binding domain: sa187 (C347S, TGT to AGT), e1368 (S45 1L, TCA toTTA), e1365 (A458T, GCT to ACT), sa229 (D526N, GAT to AAT), and twomutations in mg43 (C279Y, TGT to TAT and P348L, CCC to CTC). Three daf-2mutations substitute conserved amino acid residues in the insulinreceptor kinase domain: sa219 (D1252N, GAT to AAT), e1391 (P1312L, CCCto CTC), and e1370 (P1343S, CCA to TCA). Darkened residues indicateamino acid identity. Hatched residues indicate amino acid similarity.The percentages under the domains represents the percentage of identityobserved between DAF-2 and each receptor. The corresponding BLASTprobabilities of DAF-2 random match to each protein is: 6.4×10⁻¹⁵⁷(human insulin receptor), 2.7×10⁻¹⁵⁶ (human IGF-I receptor), 2.1×10⁻¹⁵³(molluscan InR homolog), 8.3×10⁻¹⁵³ (mosquito InR homolgoue), 1.6×10⁻¹³⁸(human insulin receptor-related receptor), 1.7×10⁻¹²² (Drosophila InRhomolog ), 2.0×10⁻¹⁰⁸ (Hydra InR homolog). DAF-2 is more distant fromthe next most closely related kinase families: 8.9×10⁻⁵⁸ (v-ros) and3.0×10⁻⁵¹ (trkC neurotrophin receptor).

[0113] Conserved cysteine residues in the ligand-binding domain (top)are marked with dots. In the kinase domain, active site residues thatmediate insulin receptor kinase specificity are marked with stars. Allof these residues are homologous in DAF-2. The mutations found in humanpatients are indicated at the top of the row, and daf-2 allelesubstitutions are indicated below with allele names. The sequencealignments were done with GCG programs, Pileup and Prettybox, and theidentities were calculated with the GCG program, Gap.

[0114]FIG. 3 is a photograph showing the metabolic control by C. elegansdaf-2 and daf-7. The top panel shows low levels of fat accumulation in awild type L3 animal grown at 25° C. that has been stained with Sudanblack. Non-starved animals were fixed in 1% paraformaldehyde in PBS,frozen at −70° C., and freeze-thawed three times. Fixed animals werewashed three times in PBS, and then incubated overnight in 1× Sudanblack according to standard methods. The next panel shows higher levelsof fat accumulation in daf-2(e1370) grown at the non-permissivetemperature of 25° C. These animals accumulate fat in both intestinaland hypodermal cells. daf-2(e1370) animals grown at 15° C., thepermissive temperature, accumulate low levels of fat, like wild type(data not shown). The next panel shows high fat levels in the intestineand hypodermis of daf-7(e1372) animals grown at 25° C. The bottom panelshows high levels of fat in daf-2(e1370) animals grown at the permissivetemperature until the L4 stage and then shifted to the non-permissivetemperature. This shows that daf-2 regulates metabolism without entryinto the dauer stage.

[0115]FIG. 4 is a schematic diagram showing a model of insulin signalingin the C. elegans dauer formation pathway. In the absence of dauerpheromone, an insulin-like ligand activates DAF-2, and DAF-7 TGF-β-likesignal activates the DAF-1 and DAF-4 receptors. Activated DAF-2autophosphorylates particular tyrosine residues and recruits signalingmolecules, including the PI 3-kinase homolog (a heterodimer of an as yetunidentified p85 homolog and the PI 3-kinase catalytic subunit AGE-1).The AGE-1 PI 3-kinase produces PIP3 second messenger. This secondmessenger may regulate glucose transport (White and Kahn, 1994 supra),metabolic kinase cascades that include AKT and GSK-3 (Hemmings, Science226:1344-1345, 1984; Jonas et al., Nature, 385:343-346, 1997), andtranscription and translation of metabolic genes (White and Kahn, 1994,supra). DAF-16 acts downstream of DAF-2 and AGE-1 in this pathway and isnegatively regulated by them (Vowels and Thomas, Genetics, 130:105-123,1992; Gottlieb and Ruvkun, Genetics, 137:107-110, 1994). While both theDAF-7/TGF-β and DAF-2/insulin signaling pathways converge to controldauer formation, only the DAF-2 pathway controls reproductive phaselongevity. This may be due to non-transcriptional outputs of DAF-2suggested by precedents from insulin receptor signaling. DAF-7 signalingoutput is predicted to be only transcriptional as described herein.

[0116]FIG. 5A shows that C. elegans daf-3 was genetically mapped to aregion on the X chromosome between aex-3 and unc-1. Cosmid and plasmidclones from the region were assayed for transformation rescue (Mello etal., EMBO J. 10: 3959-3970,1991). Plasmid pRF4 (rol-6 transformationmarker, 100 ng/ml), and cosmids (5-6 ng/ml) were injected into the gonadof daf-7 (e1372); daf-3 (e1376) animals. Transgenic animals were scoredfor dauer formation at 25° C.; a dauer (i.e., a return to the daf-7phenotype) indicates rescue of daf-3; clones that rescue daf-3 areboxed. B0217 rescues the daf-3 phenotype; eighteen of nineteentransgenic lines were rescued (˜80% dauers). Examination of sequenceprovided by the C. elegans Sequencing Consortium revealed a Smadhomologous gene on B0217. A 13 kb subclone of B0217 containing just theSmad also rescues daf-3 (see FIG. 3). No rescue was seen upon injectionof other cosmids from the region, B0504 (7 lines tested, <1% rescue) andC05H10 (10 lines tested, <1% rescue). mgDf90 is a deletion that removesall of daf-3.

[0117]FIG. 5B shows the structure of the C. elegans daf-3 coding region.The top is the exon/intron structure of daft3; coding exons are filledboxes, non-coding regions are open boxes, and lines are introns. daf-3cDNAs were isolated according to standard methods. Four cDNAs weresequenced completely; their N-termini are indicated by vertical lines.These three cDNAs contain ˜400 bp of 3′ UTR, but no poly-A tail; a C.elegans consensus poly-adenylation sequence is found 12 bp from the 3′end of the cDNAs. The longest of this cDNA appears full-length, as itcontains a methionine codon and the genomic sequence contains no othermethionine codon and no putative splice sites upstream before in-framestop codons. To further characterize the 5′ end of daf-3, PCR productsfrom libraries or individual daf-3 cDNAs were sequenced. From DNAisolated from a cDNA library, we amplified a product with a primer toSL1 and to a region in conserved domain I (shown as primer 1). For theindividual cDNAs, we amplified with a primer to the cDNA vector andprimer 1. These PCR products were sequenced from primer 2 to the 5′ end,and we found that there is alternative splicing at the 5′ end of daf-3,upstream of the conserved domains. The two alternate splice forms areindicated, and the ends of individual cDNAs are indicated by verticallines. Note that the second has the trans-spliced leader SL1 that isfound at the 5′ end of many C. elegans cDNAs; thus, this cDNA shows abonafide 5′ end of daf-3.

[0118]FIG. 5C shows the protein sequence alignment of C. elegans daf-3and the closest homolog found to date, human DPC4, in the Smad conserveddomains I and II. Dots indicate gaps introduced to maximize alignment.DAF-3 is 55% identical to DPC4 in domain I and 30% identical in domainII. daf-3(mg125) and daf-3(mg132) mutations are indicated by boldfaceand underline. The Smad mutational hotspot is underlined. In addition tomg125 and mg132, seven other daf-3 alleles were sequenced in thehotspot; none of them contains a mutation. Alleles sequenced were mg91,mg93, mg105, mg121, mg126, mg133 (isolated by A. Koweek and G.Patterson, unpublished) and sa205.

[0119] FIGS. 6A-6G is a panel of photographs showing C. elegans DAF-3and DAF-4 expression. These photographs show GFP fluorescence, pairedwith DAPI fluorescence or Nomarski optics photographs, as marked. AllDAF-3 photographs show animals with the second plasmid from FIG. 6Aillustrates DAF-3/GFP head expression in an L1 animal. FIG. 6Billustrates DAF-3/GFP expression in the ventral nerve cord of an adultanimal. L1 animals demonstrated similar expression patterns. FIG. 6Cillustrates DAF-3/GFP expression in the intestine of an L1 animal. FIG.6D illustrates DAF-3/GFP expression in the distal tip cell of an L4animal. FIG. 6E illustrates DAF-3/GFP expression in an embryo withapproximately 200 nuclei. FIG. 6F illustrates DAF-4/GFP expression inthe head of an L1 animal. FIG. 6G illustrates DAF-4/GFP expression inthe dorsal nerve cord and ventral nerve cord of an L4 animal.

[0120]FIG. 7 is a table that shows the rescuing ability and suppressionof C. elegans daf-7 by daf-3 plasmids. The solid boxes represent theSmad conserved domains I and II of daf-3; the stippled boxes representgreen fluorescent protein (GFP). For all experiments shown, daf-3plasmids were injected at a concentration of 10 ng/ml, and the pRF4injection marker was injected at a concentration of 90 ng/ml. To scoredauer formation, transgenic adult animals were allowed to lay eggs onplates for several hours at room temperature and were then removed. Theplates were scored after two days at 25° C. The rescue experiment showsthe rescue of daf-7(m62); daf-3(e1376) by each of the fusion proteins.Failure to rescue results in rolling nondauers, while rescue of daf-3results in rolling dauers (the daf-7 phenotype). The control is an arraywith the pRF4 transformation marker and a non-rescuing cosmid. For eachconstruct, four or more lines were measured in two separate experiments.To measure suppression of daf-7, transgenic arrays were crossed intodaf-7 (for plasmids 1 and 3), or produced by injecting directly intodaf-7 (for plasmid 2). Transgenic (rolling) animals were scored forsuppression of daf-7 (=nondauers) or failure to suppress daf-7(=dauers). The controls are two array strains with the pRF4 marker andan unrelated GFP expressing transgene.

[0121]FIG. 8A is a photographs showing that DAF-3/GFP is associated withmetaphase chromosomes. Fixed L1 animals were immunostained with anti-GFPantibody and anti-α-tublin antibody. DNA was visualized using DAPIstaining.

[0122]FIG. 8B is a photograph showing that a truncated C. elegansdaf-3/GFP protein is predominantly nuclear. Wild-type animals wereinjected with the truncated construct shown in FIG. 7 at a concentrationof 10 ng/ml. The pRF4 transformation marker was injected at 100 ng/ml.The photograph shows a late L1 or early L2 animal, and daf-3 ispredominantly nuclear. The clear spot in the center of some of thenuclei is the nucleolus, which has no daf-3/GFP. All cells in theseanimals have predominantly nuclear daf-31GFP, including the ventral cordneurons, intestinal cells, and distal tip cell (all shown), as well ashead and tail neurons and hypodermal cells.

[0123]FIGS. 9A and 9B show models for the role of the C. elegansdaf-3/DAF-8/DAF-14 Smad proteins in dauer formation. FIG. 9A shows dauerreproductive growth induction. FIG. 9B shows reproductive dauer growthinduction.

[0124]FIG. 10 is a schematic illustration showing the genetic pathwaythat regulates C. elegans dauer formation.

[0125] FIGS. 11A-11C show the cDNA sequences of the differentiallyspliced C. elegans daf-3 transcripts (SEQ ID NOS: 39, 52, and 53).

[0126] FIGS. 12A-12C show the amino acid sequences of the C. elegansDAF-3 polypeptide isoforms (SEQ ID NOS: 40-42).

[0127]FIGS. 13A and 13B show the cDNA sequence of the differentiallyspliced C. elegans daf-16 transcripts (SEQ ID NOS: 43 and 44).

[0128]FIGS. 14A and 14B show the amino acid sequences of the C. elegansDAF-16 polypeptide isoforms (SEQ ID NOS: 45 and 46).

[0129]FIG. 15 shows the cDNA sequence of the C. elegans age-1 gene (SEQID NO: 47).

[0130]FIG. 16 shows the amino acid sequence of the C. elegans AGE-1polypeptide (SEQ ID NO: 48).

[0131]FIG. 17 is a schematic diagram illustrating that convergent TGF-βand insulin signaling activates glucose-based metabolic genes.

[0132]FIG. 18 is a schematic diagram illustrating a switch to fat-basedmetabolism in the absence of DAF-7 and DAF-2 signals (in phermone).

[0133]FIG. 19 is a schematic diagram illustrating inhibition of theDAF-16 pathway by drugs to ameliorate lack of insulin signaling.

[0134]FIG. 20 is a schematic diagram illustrating inhibition of DAF-3 bydrugs to ameliorate a lack of DAF-7 signaling (for example inobesity-induced diabetes).

[0135]FIG. 21A (SEQ ID NOS: 211-215) is an illustration showing thathuman FKHR, FKHRL1, and AFX are the closest relatives to DAF-16. Notethat the differentially spliced DAF-16 forkhead domain is lesshomologous.

[0136]FIG. 21B is an illustration showing a forkhead family tree,illustrating that DAF-16 is much more closely related to FKHR, FKHRL1,and AFX than any other forkhead protein.

[0137]FIG. 22 is a photograph showing that daf-16 is expressed in targettissues, like daf-3. This supports the model that DAF-3 and DAF-16 arecapable of interacting.

[0138]FIG. 23 is an illustration showing a model for treatment ofobesity-induced diabetes with DAF-7 protein.

[0139]FIG. 24 is an illustration showing the genetic mapping ofsup(mg144) to the AKT genetic region.

[0140]FIG. 25 is an illustration showing the comparison of C. elegansAKT with mammalian AKT.

[0141]FIG. 26A is a photograph showing the expression of AKT:GFP indaf-2 dauers.

[0142]FIG. 26B is a photograph showing the expression of AKT:GFP in anN2 adult worm.

[0143]FIG. 27 is a schematic illustration showing the molecular map ofdaf-16.

[0144]FIG. 28 is a graph illustrating the homology of C. elegansinsulin-like molecules (SEQ ID NOS: 117-124) with human insulin (SEQ IDNO: 125) and a consensus motif.

[0145]FIG. 29 is a graph illustrating a PRETTYBOX analysis of insulinsuperfamily members (SEQ ID NOS: 126-153).

[0146]FIG. 30 is a graph illustrating a PILEUP analysis of insulinsuperfamily members.

[0147]FIG. 31 is a diagram illustrating the akt-1 region. On the top isshown the genetic and physical map of akt-1. akt-1 is contained oncosmid C12D8. Shown on the bottom is the exon/intron structure of akt-1.Coding regions are filled boxes, non-coding regions are open boxes, andintrons are lines. The pleckstrin homology domain is indicated byhatched boxes (Musacchio et al., Trends Biochem. Sci. 18:343-348, 1993).The kinase domain is indicated in gray (Hanks and Hunter, in The ProteinKinase Facts Book Protein-Serine Kinases, eds. Hardie, G. & Hanks, S.,Academic Press, Inc., San Diego, Calif., pp. 7-47, 1995). akt-1a genestructure was confirmed by sequencing of cDNAs. akt-1b gene structurewas deduced based on partial cDNA sequence that confirmed the exon 5 toexon 7 splice and 3′UTR only.

[0148]FIG. 32 is a diagram illustrating the akt-2 region. On the top isshown the genetic and physical maps of the akt-2 region. akt-2 iscontained on cosmid R03E1. On the bottom is shown the exon/intronstructure of akt-2. All symbols are as in FIG. 31. Gene structure wasdeduced by sequencing of a cDNA which confirmed exons 2-8 and the 3′UTR;Genefinder (Univ. of WA) predicts exon 1.

[0149]FIG. 33 is a graph illustrating a dendogram of Akt/PKB and PKCprotein kinase families. Pileup (GCG) was used to align the entirecoding sequences of the indicated proteins. C. elegans proteins areindicated by “Ce,” rat by “r,” human by “h,” mouse by “m,” bovine by“b,” and D. melanogaster by “D.” The accession numbers for the proteinsused in the Pileup are contained in parentheses: CePKC2a(U82935),rPKCβ1(M19007), hAkt/PKBα(M63167), mAkt/PKB(M94335), bAkt/PKB(X61036),hAkt/PKBp2(M95936), rAkt/PKBγ(D49836), Dakt1(Z26242). To anchor thetree, rPKCβ1 (the closest non-Akt/PKB homolog to both akt-1a andhAkt/PKBα), and CePKC2a (the closest C. elegans homolog to rPKCp62 1)were included in the Pileup. The Akt/PKB homologs described in thisreport are indicated by the gray box.

[0150]FIG. 34 is a graph illustrating a PILEUP (GCG) analysis of AKT-1a(SEQ ID NO: 154), AKT-1b (SEQ ID NO: 155), AKT-2 (SEQ ID NO: 156), andhuman Akt/PKBα (M63167) (SEQ ID NO: 157). Identical residues areindicated by dots, gaps introduced in order to align the sequence areindicated by dashes. The pleckstrin homology domain (Musacchio et al.,Trends Biochem. Sci. 18:343-348, 1993) is indicated by the N-terminalgray shaded areas, the kinase domain (Hanks and Hunter, in The ProteinKinase Facts Book Protein-Serine Kinases, eds. Hardie, G. & Hanks, S.,Academic Press, Inc., San Diego, Calif., pp. 7-47, 1995) is indicated bythe C-terminal gray shaded areas. The mg144 Ala183Thr substitution isindicated as a T above the AKT-1a sequence. The Akt-1 and AKT-2phosphorylation sites that correspond to the hAkt/PKBα Thr308 and Ser473phosphorylation sites (Alessi et al., EMBO J. 15:6541-6551, 1996) areindicated as dots above the amino acid residue that is phosphorylated.

[0151]FIGS. 35A and 35B show the genomic sequence of pdk-1 (SEQ ID NO:158).

[0152]FIG. 36 shows the amino acid sequence of pdk-1a (SEQ ID NO: 159).

[0153]FIG. 37 shows the amino acid sequence of pdk-1b (SEQ ID NO: 160).

[0154] FIGS. 38A-38F show metabolic control by age-1 and daf-18. Fataccumulation was assayed by Sudan Black staining in hermaphrodites grownat 20° C. The animal in FIG. 38E is a dauer larva, whereas FIGS. 38A-Dand F are comparable reproductive larval stage 4 animals. FIG. 38A showsa wild type (Bristol N2) animal. FIG. 38B shows a daf-18(e1375) animal.FIG. 38C shows an age-1(mg44)/mnC1 animal. This L4 stage larva has bothmaternal and zygotic contributions of age-1. FIG. 38D shows anage-1(mg44) animal. This L4 stage larva is a homozygote from anage-1(mg44)/mnC1 parent and has a maternal, but not zygotic,contribution of age-1. This maternal contribution of age-1 is sufficientto allow reproductive development, but the animal accumulates largeramounts of fat than the wild type or the zygotically rescued age-1mutant. FIG. 38E shows an age-1(mg44) animal. This dauer larva is aprogeny of a maternally rescued age-1(mg44) animal. The lack of maternaland zygotic contribution of age-1 causes this animal to develop as adauer and accumulate fat. FIG. 38F shows an age-1(mg44); daf-18(e1375)animal. This L4 stage larva lacks both a maternal and zygoticcontribution of age-1, but does not develop into a dauer due to thesuppression by the daf-18 mutation. The daf-18 mutation also suppressesthe accumulation of fat phenotype of the age-1 null mutant.

[0155]FIGS. 39A and 39B illustrate that daf-18 encodes a homologue ofPTEN (MMAC/TEP1). FIG. 39A shows the exon/intron structure of DAF-18(SEQ ID NO: 365-368). The phosphatase domain is indicated in gray. Thebottom of this figure indicates that daf-18(e1375) has a 30 base pairinsertion in the fourth exon. 13 base pairs (shaded) are duplicatedalong with two smaller segments of the repeat (thick bars). Thismutation introduces a premature stop codon (*). FIG. 39B shows analignment of the phosphatase domains of DAF-18 and PTEN (GeneBankaccession U9305 1) (SEQ ID NO: 369-378). Pileup (GCG) was used to alignthe entire coding sequence. The phosphatase domain is shown withidentical amino acids shaded. The probable active site Cys-(X)₅-Argsequence is indicated with a bar.

[0156]FIGS. 40A and 40B show the amino acid and nucleic acid sequencesof the C. elegans daf-18 gene (SEQ ID NO: 379-380).

[0157]FIG. 41 illustrates a model for the regulation of metabolism anddauer arrest by insulin receptor-like signaling. DAF-2 insulinreceptor-like activates AGE-1 PI3K to generate PIP₃ and PI(3,4)P₂. PIP₃and PI(3,4)P₂ may activate AKT-1 and AKT-2 directly by binding to the PHdomain and indirectly by regulating PDK1-mediated phosophorylation ofthe threonine 308 equivalent site. In addition, AKT-1 may be regulatedby phosphorylation at the serine 473 equivalent (AKT-2 lacks this site).DAF-18 PTEN limits AGE-1 PI3K signals by dephosphorylating PIP₃ and/orPI(3,4)P₂. In the absence of AGE-1 signals, loss of DAF-18 allows analternative source of PI(3,4)P₂ and PIP₃ to accumulate and activateAKT-1 and AKT-2. AKT-1/AKT-2 signals converge with an additionalsignaling pathway from the DAF-2 receptor to regulate the DAF-16 Forkhead transcription factor. DAF-16 responsive genes control metabolism,reproductive growth, and lifespan.

[0158]FIG. 42 shows the C. elegans cod-5 nucleic acid and amino acidsequences (SEQ ID NO: 381-382).

[0159] FIGS. 43 shows the C. elegans cod-5 knockout cDNA and amino acidsequences (SEQ ID NO: 383-384).

[0160]FIGS. 44A, 44B, and 44C show the effect of muscarinic agonists andan antagonist on dauer recovery in C. elegans and A. caninum. In FIG.44A, oxotremorine, a synthetic muscarinic agonist, promotes dauerrecovery in both C. elegans and A. caninum. Note that daf-2(e1370) failsto recover at all concentrations. In FIG. 44B, arecoline, a naturalmuscarinic agonist, promotes dauer recovery in both C. elegans and A.caninum. Note that daf-2(e1370) fails to recover at all concentrations.FIG. 44C shows that atropine can specifically inhibit the muscarinicagonist-induced response. In C. elegans, at 1 mM oxotremorine, as theconcentration of atropine, a muscarinic antagonist, is increased, dauerrecovery is completely inhibited. Similarly, in A. caninum larvae,arecoline and increasing amounts of atropine cause dauer recovery to becompletely inhibited.

[0161]FIGS. 45A and 45B show that atropine specifically inhibits dauerrecovery in C. elegans and A. caninum. In FIG. 45A, wild-type N2 dauerswere placed on plates containing either bacterial food; no bacteria andno pheromone; bacteria and 1 mM atropine; or pheromone at 25 degrees. 42hours later, the plates were scored for the presence of dauers andreproductive L4/adults. With no food and no pheromone, 100% of theanimals remained arrested at the dauer stage (n>280). Addition of foodcaused efficient dauer recovery at 25 degrees. Dauers placed on plateswith food recovered efficiently, with less than 1% remaining arrested atthe dauer stage (n>1000). Addition of 1 mM atropine in the presence offood inhibited dauer recovery: 82% remained arrested at the dauer stage(n=1432). 80% of the animals maintained on plates with pheromone but nofood (n=505) remained arrested at the dauer stage. The pheromonepreparation contained bacterial contaminants that may have been used asa food source. In A. caninum incubated with 10% serum and 25 mM GSM, 9%of the infective larvae remained as dauers and did not resume feeding.Addition of atropine (0.5 mM) to the serum and GSM completely inhibitedrecovery of A. caninum L3 and no worms resumed feeding. In FIG. 45B,daf-2(e1370) and daf-7(e1372) dauers were placed onto plates at 15degrees. Animals were scored for the presence of dauers and reproductiveadults two days after food was added to the plate. Bacterial food wasadded after temperature downshift failed to induce dauer recovery indaf-2(e1370) (n=140) and daf-7(e1372) (n=36). Only 21% of thedaf-2(e1370) (n=509) and 21% of the daf-7(e1372) (n=112) dauer larvae onplates at the lower temperature with food remained as dauers after twodays. Atropine at 1 mM completely inhibited dauer recovery ondaf-2(e1370) (n=205) and daf-7(e1372) (n=166) dauers on plates at 15degrees in the presence of food.

[0162]FIG. 46 shows a model for cholinergic input induction of dauerrecovery. In dauer pheromone or in a daf-7 mutant, the DAF-7 TGF-Bligand is not produced by the ASI sensory/secretory neuron. Therefore,there is no activation of the DAF-1 and DAF-4 TGF-β receptors ordownstream DAF-8 and DAF-14Smad proteins, and this results in high DAF-3Smad activity in target tissues. In pheromone without muscarinicagonists, no insulin like signal is released, causing a lack of DAF-16regulation, which in combination with unregulated DAF-3 induces dauerarrest. Under these conditions, muscarinic stimulation causes release ofan insulin-like DAF-2 ligand which stimulates the DAF-2/AGE-1 signalingpathway to DAF-16 activation in target tissues. Since daf-7 mutants canrecover in muscarinic agonists, the TGF-β signaling pathway is notrequired for dauer recovery.

[0163] Under normal conditions of dauer recovery upon release fromphermone and addition of food and low temperature, these conditions maycause release of acetylcholine, either through the temperature or foodpathways, which binds to the muscarinic receptor on the insulin-likesignaling cell. Binding of acetylcholine to the receptor causes anincrease in insulin release. Temperature may be coupled via theintemeurons AIY and AIZ to the DAF-2 insulin-like signaling pathway,rather than the TGF-13 signaling pathway, because mutations in thethermoregulatory gene ttx-3 can suppress mutations in daf-7 and notmutations in daf-2.

[0164]FIGS. 47A and 47B show the nucleic acid and amino acid sequencesof a human DAF-7 homologue (SEQ ID NO: 385-386).

THE DAF-2 INSULIN RECEPTOR FAMILY MEMBER REGULATES LONGEVITY ANDDIAPAUSE IN C. ELEGANS

[0165] Arrest at the C. elegans dauer stage is normally triggered by adauer-inducing pheromone detected by sensory neurons which signal via acomplex pathway to target tissues that are remodeled and metabolicallyshifted such as the germ line, intestine, and ectoderm (Riddle, In:Caenorhabditis elegans II, D. Riddle, T. Blumenthal, B. Meyer, J.Priess, eds., Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.,1997, pp. 739-768. Kenyon, op cit., pp. 791-813.). Genetic epistasisanalysis of daf mutants that arrest at the dauer stage or enter thereproductive life cycle independent of pheromone regulation has revealedparallel genetic pathways that regulate distinct aspects of the dauermetamorphosis (Vowels and Thomas, Genetics 130: 105-123, 1992; Gottlieband Ruvkun, Genetics 137: 107-120, 1994). The pathway that includesdaf-2 is unique in that it controls both reproductive development andnormal senescence: daf-2 mutant animals arrest development at the dauerlarval stage and have dramatically increased longevity (Table I)(Riddle, In: Caenorhabditis elegans II, D. Riddle, T. Blumenthal, B.Meyer, J. Priess, eds., Cold Spring Harbor Laboratory, Cold SpringHarbor, N.Y., 1997, pp. 739-768; Kenyon, op cit. pp 791-813; Vowels andThomas, Genetics 130: 105-123, 1992; Gottlieb and Ruvkun, Genetics 137:107-120, 1994; Larsen et al., Genetics 139: 1567-1583, 1995; Kenyon etal., Nature 366: 461-464, 1993; Dorman et al., Genetics 14 1: 1399-1406,1995).

[0166] Table I shows the percentage of dauer formation of daf-2 allelesand the associated mutations. Eggs from animals grown at 15° C. (day 0)were incubated at 15, 20, or 25° C. Numbers in parenthesis are animalscounted. Numbers of wild-type animals and dauers were counted on day 3(20° C. and 25° C.) or day 5 (15° C.). Most of the dauers marked withstars recovered by day 4 (sa229 at 25° C.) or by day 8 (sa229) and sa219at 15° C., e1368 and sg219 at 20° C., and e1365 and e1368 at 25° C.).mg43 was studied as follows: dpy-1(el)daf-2(mg43); SDP3 animals weregrown at 20° C. until the young adult stage. Eggs from five adults werelaid at 15° C. or 20° C. and grown at the same temperatures. Numbers ofDpy-Daf animal and Dpy-non-Daf animals were counted on day 3 (20° C.) orday 5 (15° C.). Sg187 and sg229 were also studied by Malone and Thomas(Genetics 136:879-886, 1994). TABLE I Percentage of dauer formation ofdaf-2 alleles % dauer formation Region Allele mutation 15° C. 20° C. 25°C. cys-rich mg43 C279Y& 100.0 (215) 100.0 (245) n.d. sa187 C347S  0.4(461)  98.7 (224) 100 (910) ligand- e1368 S451L  0.0 (328)  4.5* (418) 99.7* (698) binding e1365 A458T  0.0 (450)  0.0 (461)  99.4* (814)kinase sa229 D526N  3.4* (234) n.d.  22.1* (420) sa219 D1252N  10.0*(460)  99.7* (396) 100 (514) e1391 P1312L  3.3 (332) 100 (323) 100 (322)e1370 P1343S  0.0 (520)  0.0 (188) 100 (635)

[0167] Genetic mapping using both visible genetic markers andrestriction fragment length polymorphism (RFLP) markers places daf-2between mgP34 and mgP44 (FIG. 1). While cosmid coverage of this physicalgenetic region is not complete, YAC Y53G8 carries the genomic regionthat includes mgP34 and mgP44, which flank daf-2 (FIG. 1). As a step inthe C. elegans genome sequencing effort, random M13 subclones derivedfrom Y53G8 were sequenced by the Genome Sequencing Center.

[0168] Sequence Identities Show that DAF-2 is Likely to Bind to anInsulin-like Ligand and to Phoshorylate Tyrosine Residues

[0169] The amino acid sequences and nucleotide sequences encoding DAF-2are shown in FIGS. 2A and 2B, respectively. Using BLASTX to compare 570translated Y53G8 M13 subclone sequences against the Genbank proteindatabase, we found that four sequences are homologous to the mammalianinsulin receptor family. An insulin receptor was a good daf-2 candidategene because insulin regulates vertebrate growth and metabolism (Whiteand Kahn, J. Biol. Chem. 269: 1-4, 1994), and because aphosphatidylinositol (PI) 3-kinase has been shown to act in both theinsulin receptor and daf-2 pathways (White and Kahn, J. Biol. Chem. 269:1-4, 1994; Morris et al., Nature 382: 536-539, 1996). The detection ofmultiple daf-2 mutations in the gene (see below), and the coincidence ofthe genetic location of this insulin receptor homolog with daf-2 (FIG.2C) establish that this insulin receptor homolog corresponds to daf-2.

[0170] The daf-2 transcription unit and gene structure were determinedusing PCR primers derived from daf-2 genomic subclone sequences toamplify daf-2 genomic and cDNA regions. A probable full length daf-2cDNA bears a 5172 base open reading frame, a 485 base 5′ UTR and a 159base 3′ UTR (FIGS. 1, 2A). The predicted DAF-2 protein shows longregions of sequence identity to the insulin receptor family. Over theentire protein, DAF-2 is 35% identical to the human insulin receptor(Ebina et al., Cell 40: 747-58, 1985; Ullrich, et al., Nature 313:756-61, 1985), 34% identical to the human IGF-I receptor (Ullrich, etal., EMBO J: 5, 2503-12, 1986), and 33% identical to the human insulinreceptor-related receptor (Shier and Watt, J. Biol. Chem. 264: 14605-8,1989). DAF-2 is the only member of the insulin receptor family in the 90Mb C. elegans genome sequence (about 90% complete) or in the 10 Mb C.elegans EST sequence database. Because it is equally distant frominsulin, IGF-I, and insulin receptor-related receptors, DAF-2 isprobably the homolog of the ancestor of these duplicated and divergedreceptors, and thus may subserve any or all of the functions of thesemammalian receptors (see below). Like these receptors, DAF-2 has aputative signal peptide, a cysteine-rich region in the putative ligandbinding domain, a putative proteolysis site, a transmembrane domain, anda tyrosine kinase domain. In addition, DAF-2 has a C-terminal regionthat may serve a function similar to the mammalian insulin receptorsubstrate-1 (IRS-1) (FIG. 2; White and Kahn, J. Biol. Chem. 269: 1-4,1994).

[0171] In the approximately 500 amino acid ligand-binding domain of theinsulin receptor, DAF-2 is 36% identical to insulin receptor and 35%identical to the IGF-I receptor. Twenty-one of twenty-threephylogenetically conserved cysteine residues in this domain areconserved in DAF-2 (FIG. 2C). The DAF-2 cys-rich region is 34% identicalto human insulin receptor and 28% identical to the IGF-I receptor. Sixdaf-2 mutations map in this domain (FIG. 2C, Table I). The mg43 andsa187 mutations substitute conserved residues in the cys-rich region(FIG. 2C). daf-2(mg43) carries two mutations which substitute conservedresidues, which may explain the strength of this allele(non-conditional, Table I). Other substitutions at non-conservedresidues cause less severe phenotypes (Table I). Insulin resistant anddiabetic patients with mutations in the ligand binding domain of thehuman insulin receptor gene have been identified (Taylor, Diabetes 4 1:1473-1490, 1992) (see below). These mutations impair receptor transportto cell surface, or insulin binding affinity, or both. The DAF-2mutations in this domain might similarly decrease receptor signaling tocause dauer arrest.

[0172] Insulin receptors are α2,β2 tetramers proteolytically processedfrom a single precursor protein (White and Kahn, J. Biol. Chem. 269:1-4, 1994). DAF-2 bears a probable protease recognition site at aposition analogous to the insulin receptor processing site (RVRR806-809) (Yoshimasa et al., J. Biol. Chem. 265: 17230-17237, 1990).

[0173] The 275 amino acid DAF-2 tyrosine kinase domain is 70% similarand 50% identical to the human insulin receptor kinase domain. Uponinsulin binding, the intracellular tyrosine kinase domain of the insulinreceptor phosphorylates particular tyrosine residues flanked bysignature amino acid residues (upstream acidic and downstreamhydrophobic amino acids (Songyang and Cantley, Trends Biochem. Sci. 20:470-475, 1995)) in the intracellular domain as well as on IRS-1 (Whiteand Kahn, J. Biol. Chem. 269: 1-4, 1994). Multiple DAF-2 tyrosineresidues in these sequence contexts are likely autophosphorylationtargets, including three tyrosines in a region similar to the insulinreceptor activation loop and one in the juxtamembrane region asdescribed above (FIG. 2C). Based on the crystal structure of the insulinreceptor kinase domain bound to its activation loop, eight kinase domainresidues mediate target site specificity (Hubbard et al., Nature 372:746-754, 1994). In DAF-2 (but not in more distantly related receptorkinases), these residues are invariant (5/8) or replaced with similaramino acids (3/8: K to R, E to D) (FIG. 2C), suggesting that DAF-2phosphorylates the same target tyrosine motifs as the insulin receptorkinase.

[0174] Three daf-2 missense mutations substitute conserved amino acidresidues in the kinase domain (FIG. 2C, Table I). All three mutationscause moderate to strong dauer constitutive phenotype, but none are asstrong as the non-conditional alleles, for example, mg43 (Table I).Human insulin receptor mutations in the kinase domain exhibit decreasedkinase activity and cause severe insulin resistance and associateddefects (FIG. 2C; Taylor, Diabetes 41: 1473-1490, 1992). Remarkably, ahuman diabetic insulin resistant patient bears the same amino acidsubstitution (P1178L) as daf-2(e1391) (Kim et al., Diabetologia 35:261-266, 1992). This patient was reported to be heterozygous for thissubstitution. daf-2(e1391) is not dominant whereas it is a highlypenetrance recessive mutation (Table I ).

[0175] To test for dominance of daf-2(e1391), using a genetically markedbalancer chromosome, 105 dauers segregated from 485 daf-2/+parents asexpected for a recessive mutations. The genotype of 76/77 of theseanimals was homozygous daf-2(e1391) whereas 1/77 of the dauers wasdaf-2(e1391)1+, indicating a less than 1% dominance. It is possible thatin contrast to C. elegans, the P1178L mutation in humans is dominant, orthat the patient carries a second insulin receptor mutation in trans, orcarries mutations in other genes (for example, other complex type IIdiabetes loci) that enhance the dominance of P1178L (Bruning et al.,Cell 88: 561-572, 1997).

[0176] AGE-1 PI 3-kinase is a Major DAF-2 Signaling Output

[0177] Like the Drosophila insulin receptor homolog, DAF-2 has a longC-terminal extension that may function analogously to mammalian IRS-1(Fernandez et al., EMBO J. 14: 3373-3384, 1995). In mammals, IRS-1tyrosine residues are phosphorylated by the insulin receptor kinase, andthese phosphotyrosines mediate binding to a variety of signalingproteins bearing SH2 domains (White and Kahn, J. Biol. Chem. 269: 1-4,1994; Songyang et al., Cell 72: 767-778, 1993.). Many, but not all, ofthe DAF-2 C-terminal extension tyrosines bear flanking sequence motifssuggestive that they are autophosphorylated (FIG. 2A; Songyang andCantley, Trends Biochem. Sci. 20: 470-475, 1995). Based on precedentsfrom IRS-1 interactions with mammalian PI 3-kinases (White and Kahn, J.Biol. Chem. 269: 1-4, 1994), a YXXM motif at DAF-2 Y1504 is likely tomediate interaction with the AGE-1 PI 3-kinase, which acts in the samegenetic pathway as daf-2 (FIG. 4) (Morris et al., Nature 382: 536-539,1996).

[0178] Three DAF-2 tyrosine residues, Y1293, Y1296 and Y1297, in theregion corresponding to the insulin receptor kinase Y1158 to Y1163activation loop are likely to be autophosphorylated, based on thepredicted similarity between the DAF-2 and insulin receptorphosphorylation targets (FIG. 2C). Another likely target for DAF-2autophosphorylation is the Y1106 NPEY motif located in the regioncorresponding to the insulin receptor juxtamembrane region NPEY motif(at Y972), that has been shown to mediate IRS-1 binding via its PTBdomain to the insulin receptor (White and Kahn, J. Biol. Chem. 269: 1-4,1994). While DAF-2 bears one YXXM motif implicated in coupling to PI3-kinase, mammalian IRS-1 and Drosophila insulin receptor (Fernandez etal., EMBO J. 14: 3373-3384, 1995) bear multiple YXXM motifs. Although nop85-like adaptor subunit has yet been detected in the C. elegansdatabase, the AGE-1 homology to mammalian p110 suggests the existence ofa homologous or analogous adaptor (Morris et al., Nature 382: 536-539,1996). In the DAF-2 C-terminal domain, two other tyrosine residues maybe autophosphorylated and bound to particular SH2-containing proteins:Y1678 binding to a PLC-γ or SHP-2 homolog, and Y1686, perhaps binding toSEM-5 (FIG. 2A) (Songyang et al., Cell 72: 767-778, 1993). Whilemutations in, for example, ras and MAP kinase have not been identifiedin screens for dauer constitutive or dauer defective mutations, thesegeneral signaling pathway proteins may couple to DAF-2 as they couple toinsulin signaling in vertebrates (White and Kahn, J. Biol. Chem. 269:1-4, 1994).

[0179] The insulin receptor also couples to other signaling pathways(White and Kahn, J. Biol. Chem. 269: 1-4, 1994); analogous DAF-2phosphotyrosine residues may mediate these interactions (as describedabove). Thus, we suggest that tyrosines in the DAF-2 cytoplasmic domainare autophosphorylated upon ligand binding, and recruit the AGE-1 PI-3kinase homolog (as well as other molecules) to signal reproductivedevelopment and normal senescence.

[0180] Metabolic Control by daf-2 in Control of Diapause and Aging

[0181] Insulin and its receptor families play key roles in vertebrate(and by our evidence in invertebrates) metabolic and growth control(Kahn and Weir, eds., Joslin's Diabetes Mellitus, Lea & Febiger, 1994).Upon insulin release--by increasing blood glucose and autonomicinputs—insulin receptor engagement directs a shift in the activities ofkey metabolic enzymes, as well as changes in the transcription andtranslation of metabolic regulators in fat, liver, and muscle cells, allof which lead to assimilation of glucose into glycogen and fat (Whiteand Kahn, J. Biol. Chem. 269: 1-4, 1994). IGF-I is released from theliver in response to pituitary growth hormone, and mediates many of thegrowth and development responses to that endocrine signal (Mathews etal., Proc Natl Acad Sci. U.S.A. 83: 9343-7, 1986). Interestingly,lifespan is dramatically increased in dwarf mice with defects in growthhormone signaling, and presumably decreased IGF-I signaling as well(Brown-Borg et al., Nature 384: 33, 1996). No function for the insulinreceptor-related receptor has yet been established, though it isexpressed in conjunction with NGF receptor (Reinhardt et al., J.Neurosci. 14: 4674-4683, 1994).

[0182] Diapause arrest in general and dauer arrest in particular areassociated with major metabolic changes (Tauber et al., SeasonalAdaptation of Insects, Oxford University Press, New York, N.Y., 1986),consistent with a model that daf-2 acts in a metabolic regulatorypathway related to insulin signaling. In wild-type animals, DAF-2signaling allows non-dauer reproductive growth, which is associated withutilization of food for growth in cell number and size, and small storesof fat (FIG. 3). In daf-2 mutant animals, metabolism is shifted to theproduction of fat (FIG. 3) and glycogen (data not shown) in intestinaland hypodermal cells. Even when a temperature-sensitive daf-2 mutantallele is shifted to the non-permissive temperature at the L4 or adultstage (after the critical period for daf-2 control of dauer formation),metabolism is shifted towards storage of fat (FIG. 3). Thus daf-2 alsoregulates metabolism during reproductive development. Similar metabolicshifts are seen in wild-type pheromone-induced dauers (data not shown),age-1 mutants (data not shown), and daf-7 mutants (FIG. 3). In supportof this metabolic shift, in dauer larvae, enzymes that regulateglycolysis are down-regulated while those that regulate glycogen and fatsynthesis are up-regulated, and there is ultrastructural evidence forincreased lipid and glycogen (O'Riordan and Burnell, Comp. Biochem. &Physiol. 92B: 233-238, 1989; O'Riordan and Burnell, Comp. Biochem. &Physiol. 95B: 125-130, 1990; Popham and Webster, Can. J. Zool. 57:794-800, 1978; Wadsworth and Riddle, Develop. Biol. 132: 167-173, 1989).The dauer metabolic shift is associated with arrest of germ lineproliferation, and arrest of somatic cell division and enlargement(Riddle, In: Caenorhabditis elegans II, D. Riddle, T. Blumenthal, B.Meyer, J. Priess, eds., Cold Spring Harbor Laboratory, Cold SpringHarbor, N.Y., 1997, pp. 739-768; Kenyon, op cit., pp. 791-813).

[0183] There is precedent for insulin-like signaling in invertebratemetabolic and growth control: insulin-like growth factors have beendetected in metabolism-regulating ganglia in molluscs (Roovers et al.,Gene 162: 181-188, 1995) and regulate molting in locust (Hetru et al.,Eur. J. Biochem 201: 495-499, 1991) and silkworm (Kawakami et al.,Science 247: 1333-1335, 1990). Consistent with the daf-2 regulation ofdiapause, injection of insulin into diapausing Pieris brassicae (aninsect) pupae induces recovery (Arpagaus, Roux's Arch. Dev. Biol. 196:527-530, 1987).

[0184] Without being bound to a particular theory, we hypothesize thatan insulin-like signal is up-regulated during reproductive developmentand stimulates DAF-2 receptor autophosphorylation and recruitment of theAGE-1 PI 3-kinase to produce the second messenger PIP3. AGE-1 is likelyto be a major signaling output of DAF-2 because of the similarity of theage-1 and daf-2 mutant phenotypes and because of their similar placementin the epistasis pathway (Vowels and Thomas, Genetics 130: 105-123,1992; Gottlieb and Ruvkun, Genetics 137: 107-120, 1994). Precedents frominsulin receptor signaling suggest the following candidate targets forDAF-2/AGE-1/PIP3 regulation of metabolism: (1) membrane fusion ofvesicles bearing glucose transporters (Kahn and Weir, eds., Joslin'sDiabetes Mellitus, Lea & Febiger, 1994) (or more probably trehalosetransporters (Tauber et al., Seasonal Adaptation of Insects, OxfordUniversity Press, New York, N.Y., 1986)) to facilitate flux of thismolecule for growth and reproductive metabolism; (2) PIP3 activates anAKT/GSK-3 kinase cascade (Hemmings, Science 275: 628-630, 1997) whichmay regulate the activities of glycogen and fat synthetic and lyticenzymes; (3) transcription and translation of metabolic genes such asPEPCK, GDH, fat synthetases, and lipases (White and Kahn, J. Biol. Chem.269:1-4, 1994). Genetic epistasis analysis suggests that DAF-2/AGE-1signaling negatively regulates daf-16 gene activity (Vowels and Thomas,Genetics 130: 105-123, 1992; Gottlieb and Ruvkun, Genetics 137: 107-120,1994). DAF-16 could act at any point downstream of AGE-1 in thissignaling pathway. Evidence is presented herein that DAF-16 representsthe major transcriptional output to DAF-2/AGE-1 PIP3 signaling.

[0185] In addition to these metabolic changes, the DAF-2 signalingcascade also controls the reproductive maturation of the germ line aswell as morphogenetic aspects of the pharynx and hypodermis (Riddle, In:Caenorhabditis elegans II, D. Riddle, T. Blumenthal, B. Meyer, J.Priess, eds., Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.,1997, pp. 739-768; Kenyon, op cit., pp. 791-813). The DAF-2 receptor mayact, for example, in the hypodermal and intestinal target tissues wherewe note a change in metabolism triggered by the dauer regulatory cascade(FIG. 3). It is also possible that DAF-2 regulates the metabolism andremodeling of tissues indirectly, for example, by controlling theproduction of other hormones (Nagasawa et al., Science 226: 1344-1345,1984; Jonas, et al., Nature 385: 343-346, 1997). Expression and geneticmosaic analysis of daf-2 is essential to distinguish these models.

[0186] Even though DAF-2 and the mammalian insulin receptor bothregulate metabolism, the metabolic defects associated with mutations inthese receptors appear to be different. Complete loss of mammalianinsulin receptor activity causes growth arrest at birth (Leprechaunismin humans), and a metabolic shift to runaway lipolysis and ketoacidosis(Kahn and Weir, eds., Joslin's Diabetes Mellitus, Lea & Febiger, 1994),rather than the fat accumulation we observe in daf-2 mutants (FIG. 3).This distinction between insulin receptor and daf-2 mutants may reflectdistinct metabolic responses to this signaling, or a difference betweencomplete loss and declines in insulin signaling. In humans, ketoacidosisis only induced during severe starvation or pathological states wheninsulin levels are very low (Kahn and Weir, eds., Joslin's DiabetesMellitus, Lea & Febiger, 1994). Since none of the daf-2 mutationsdescribed herein are clear null mutations, it is possible that daf-2dauer-constitutive alleles are more analogous to non-null human insulinreceptor mutations. Most daf-2 alleles are temperature sensitive,including alleles isolated in genetic screens that would allow therecovery of non-temperature sensitive mutations (Vowels and Thomas,Genetics 130: 105-123,1992; Gottlieb and Ruvkun, Genetics 137: 107-120,1994). Substitutions of DAF-2 amino acid residues conserved acrossphylogeny cause more penetrant dauer arrest at all temperatures thansubstitutions of non-conserved residues. daf-2 mutants that arrestdevelopment at the dauer stage independent of growth temperature arelikely to have the least gene activity (for example mg43). Several daf-2alleles also cause 5% to 10% embryonic lethality (unpublished results),suggesting that daf-2 functions during embryonic development. None ofthe daf-2 mutations detected so far are nonsense, frameshift, ordeletion alleles. It is possible that the daf-2 null phenotype isstronger than non-conditional dauer arrest, for example embryoniclethality. However, dauer constitutive daf-2 mutant alleles are isolatedfrom EMS mutagenesis at a very high rate (about 1/300 chromosomes),suggesting that the existing alleles are not rare viable alleles. Infact, the 14 year old patient with the same insulin receptor mutation asdaf-2(e1391) was morbidly obese (Kim et al., Diabetologia 35: 261-266,1992), suggesting that metabolic effects of decreased insulin signalingmay be similar to daf-2 mutants.

[0187] It may be significant to human diabetes that animals carryingmutations in daf-16 can grow reproductively even if they also carrydaf-2 and age-1 mutations that disable insulin-like metabolic controlsignals (Vowels and Thomas, Genetics 130: 105-123, 1992; Gottlieb andRuvkun, Genetics 137: 107-120, 1994). These data suggest that it isunregulated daf-16 gene activity that causes these metabolic shifts. Theanalogous metabolic defects associated with both type I and type IIdiabetes may be caused by similar unregulated activity of the humanDAF-16 homolog. Below we disclose the molecular identity of daf-16.Inhibition of its activity is expected to ameliorate the metabolicdysregulation associated with insulin signaling defects.

[0188] DAF-16 Encodes a Forkhead Transcription Factor Homolog

[0189] Using a combination of genetic mapping and detection of multipledaf-16 mutations in a 5 kb region, we have determined the nucleic acidsequence of daf-16. daf-16 was mapped 1 map unit to the left of lin-11and 3.3 map units right of unc-75 on Chromosome I. This region of thegenome contained a gap that was not covered by cosmids nor YACs. We useda fosmid library (Genome Sciences, Inc.) to walk into the gap. Sequenceanalysis of the ends of four fosmids (H27K20, H01H03, H12I08, andH35K06) revealed that the previously unmapped contig 133 lies in thelin-11 unc-75 gap. Cosmids from the approximate daf-16 genetic locationwere used to detect RFLPs between C. elegans strains Bristol N2 andBergerac RC301: mgP45 on cosmid C39H11, mgP46 on cosmid F28D9, mgP49 oncosmid C35E7, mgP50 is on cosmid C43H8. Zero out of 30 daf non-Uncrecombinants carry the RC301 alleles of mgP45 and mgP50. Two out of 30Daf non-Unc recombinants carry the RC301 allele of mgP49. 10 out of 30Daf non-Unc recombinants carry the RC301 allele of mgP46. 1 out of 4non-Lin Daf recombinants carry the N2 allele of mgP45. 4 out of 4non-Lin Daf recombinants carry the N2 allele of mgP49. These dataindicate that daf-16 lies between cosmids C43H8 and C35E7. The daf-16gene was identified by identifying deletions (mgDf50) and pointmutations (mg53 and mg54) within the forkhead gene on the cosmid R13H8(FIG. 27). There are two major daf-16 transcripts whose sequences areshown in FIG. 13A and FIG. 13B (SEQ ID NOS: 43 and 44, respectively).The amino acid sequences coding for the DAF-16 isoforms are shown inFIGS. 14A-14C (SEQ ID NOS: 44-46).

[0190] We have detected three daf-16 mutations: (1) a large deletion ofconserved regions in daf-16 (mg AF50) that proves that the daf-16 nullphenotype is a suppression of daf-2 mutations; (2) a S to L substitutionin exon 6 in daf-16 (mg 53) that alters a conserved WKNSIRH motif; and(3) a nonsense mutation in exon 3 in daf-16 (mg 54) that is predicted totruncate one of the daf-16 differentially spliced isoforms.Interestingly, this spliced isoform has a distinct forkhead DNA bindingdomain and is therefore expected to bind to distinct promoters orcombinatorial partners. This mutant is a weak suppressor of daf-2,suggesting that both DAF-16 isoforms are necessary for metaboliccontrol.

[0191] Sequence analysis has revealed that DAF-16 is a member of theforkhead (FH) transcription factor family (FIGS. 21A-21B). This strongamino acid homology indicates that DAF-16 is a transcription factor. Ourgenetic analysis indicates that DAF-16 activity is regulated by theDAF-2/AGE-1 insulin signaling pathway. Precedent from another receptorkinase signaling pathway endorses this model: the C. elegans LIN-31forkhead protein has been shown to be regulated by a tyrosine kinasesignaling cascade from the LET-23 EGF receptor homolog (Kim, Genes Dev.7: 933-947, 1993). Consistent with a model that DAF-16 acts downstreamof insulin signaling, forkhead transcription factors have also beenimplicated in metabolic regulation: another FH family member ismammalian HNF-3, an endoderm-specific transcription factor that acts atthe same metabolic control protein promoters as HNF-1 and HNF-4, both ofwhich are mutant in maturity onset diabetes of the young (MODY)(Yamagata et al., Nature 384: 455-458, 1996; Yamagata et al., Nature384: 458-460, 1996).

[0192] The identification of DAF-16 as a forkhead transcription factoralso explains much of the complex daf genetics of C. elegans. Theconvergence of DAF-7 TGF-β-like signaling and DAF-2 insulin-likesignaling is also explained by our discovery that DAF-16 is a FH proteinand DAF-3 is a Smad protein: Precedent for an interaction between Smadand forkhead proteins has been found in Xenopus. Response to the TGF-βsuperfamily relative activin in early frog development is mediated by aninteraction between the distant relative of DAF-16 called FAST-1, andthe Smad protein, Smad2 (Nature 383: 600-608, 1996). These proteins bindto an enhancer element that is very similar to the myosin II promoter towhich DAF-3 binds (see below). Thus our molecular and genetic dataindicate that the DAF Smad proteins and DAF-16 FH protein interact onmetabolic control promoters.

[0193] Interestingly, analogously to daf-16 bypass of the need for DAF-2insulin receptor signaling in daf-16 mutant animals, lin-31 mutationssuppress the need for LET-23 EGF signaling in C. elegans vulvaldevelopment. These findings indicate that the DAF-2 receptor, adownstream signaling molecule (AGE-1), and a transcription factor targetDAF-16 are involved in insulin-like signaling in C. elegans development.Without being bound by any particular theory, we hypothesize that C.elegans insulin signaling via DAF-2 and AGE-1 activate DAF-16transcriptional activity, so that in a daf-2 or age-1 mutant, or indauer pheromone, DAF-16 acts as a repressor protein causing a metabolicshift to fat metabolism. Our analysis of daf-16 expression shows that,like DAF-3, it is expressed in target tissues (FIG. 22). Our evidenceindicates that Smad protein transcription factors (e.g., DAF 3, DAF8,DAF14) and DAF-16 act on a common set of promoters as combinatorialtranscriptional regulators. Thus, it is at these metabolic genes thatDAF-7 and TGF-β-like and DAF-2 insulin-like signals converge to controlmetabolism. In addition, our evidence indicates that in the presence ofDAF-2 signaling (mimicking high insulin), DAF-16 acts as an activator oftranscription, causing a shift in metabolism toward glucose utilizationfor cell growth. The molecular analysis described herein suggests thatlack of daf-16 gene activity completely bypasses the need for insulinsignaling in metabolic control by releasing metabolic control fromDAF-16 repression. These data suggest that if a human DAF-16 homologacts downstream of insulin signaling in humans, drugs could be developedthat inhibit its activity to bypass the need for insulin signaling.Identification of a such a drug should provide a means for treating bothType I and Type II diabetes.

[0194] As shown in FIGS. 21A-21B, the human FKHR, FKHRL1, and AFX genes,identified as oncogene breakpoints but not as insulin signaling genes,are much more closely related to DAF-16 than the next closest relativein either Genbank or in the 94% complete C. elegans genome sequence.These data indicate that FKHR, FKHRL1, and AFX are excellent candidatesfor subserving the same function as C. elegans DAF-16: transduction ofinsulin signals and convergence with DAF-7-like Smad signals.

[0195] Evidence for the C. elegans AKT Kinase as the Probable Output ofDAF-2/AGE-1 Signaling

[0196] We screened genetically for mutations that bypass the need forage-1 signaling. This was done by mutagenizing a strain carrying anage-1(mg44) null mutation (this mutation was heterozygous to allow thestrain to grow). After two generations, animals that could survivewithout age-1 gene activity were selected by their lack of arrest at thedauer stage. We identified daf-16 mutations, as expected. However, wealso identified two new gain of function mutations, sup(mg142) andsup(mg144).

[0197] sup(mg144) suppresses three different age-1 alleles, indicatingthat this mutation bypasses the need for AGE-1 production of PIP3. Forexample, sup(mg144) suppresses the dauer arrest of age-1(mg44), (m333),(mg109) such that fertile adults are formed. sup(mg144) does notsuppress the lack of insulin signaling in the daf-2 mutant:daf-2(e1370); sup(mg144 ) form dauers at 25 degrees. This suggests thatnot all of the DAF-2 signaling output is via AGE-1. However, in theabsence of both DAF-2 and AGE-1 signaling, sup(mg144) weakly suppresses,allowing some fertile adults to bypass arrest at the dauer stage.daf-2(e1370); sqt-1 age-1(mg44); sup(mg144) form 8% fertile adults, 12%sterile adults, and 80% dauers at 25 degrees.

[0198] Interestingly, sup(mg144) is a dominant suppressor of age-1mutations. sqt-1 age-1(mg44); sup(mg144)1+form 100% fertile adults. Thesup(mg144) parental genotype does not affect this outcome. This dataindicates that sup(mg144) is a dominant activating or dominantinactivating mutation.

[0199] Genetic mapping indicates that sup(mg144) may identify anactivating mutation in the C. elegans AKT homologue (FIG. 25). Byplacing sup(mg144) in trans to a multiply marked chromosome (using PCRbased RFLPs), we found that sup(mg144) maps to a 2 map unit geneticinterval that includes C. elegans AKT (FIG. 24).

[0200] In particular, 2/39 sup(mg144) homozygous animals isolated from asup(mg144)/polymorphic Bergerac chromosome parent recombined betweensup(mg144)mg144 and stP6 (these animals also carried stP18). In thisexperiment mg144 was a heterozygote with RW7000 for three generations,thus placing sup(mg144) approximately 2.2 mu to the left of stP6.

[0201] In addition, 1/39 sup(mg144) homozygous animals isolated from asup(mg144)/polymorphic Bergerac chromosome parent recombined betweensup(mg144) and bP1. In this experiment mg144 was a heterozygote withRW7000 for two generations. Accordingly, this number is approximately1/80 or 1.2 mu from bP1.

[0202] We generated a GFP fusion to AKT and showed that this gene isexpressed at high levels in dauer larvae but at much lower levels and infewer cells in wild type animals. (FIGS. 26A-26B) Thus AKT represents adauer regulated gene that may respond to DAF-16 and DAF-3transcriptional control. Multiple probable binding sites, related to theDAF-3 binding site in myoII have been identified.

[0203] sup(mg142) Identifies Another Likely Output of age-1 Signaling

[0204] mg142 suppresses three different age-1 alleles (age-1(mg44),age-1(m333), and age-1(mg109) at 20 degrees. age-1(mg44); sup(mg142)form fertile adults at 15 and 20 degrees. At 25 degrees, they form 33%fertile adults and 67% sterile adults.

[0205] sqt-1 age-1(mg44); mg142/+ form 14% fertile adults and 86%sterile adults when the parent was homozygous for mg142. sqt-1age-1(mg44); mg142/+ form 67% fertile adults and 33% sterile adults whenthe parent was heterozygous for mg142. daf-2(e1370); mg142 form sterileadults at 25 degrees; daf-2(e1370); sqt-1 age-1(mg44); mg142 formsterile adults and dauers at 25 degrees. Preliminary mapping placesmg142 approximately 1 .6mu to the left of unc-1 on LGX.

[0206] Novel C. elegans Insulin-like Hormones are Probable DAF-2 Ligands

[0207] Mutations in daf-2 not only cause a metabolic shift, but alsoaffect longevity of C. elegans. The nearly complete C. elegans genomesequence allowed a definitive search for insulin superfamily members tobe performed, and, in this search, we detected multiple insulin-relatedproteins in the C. elegans genome database. When insulin, IGF-I, orIGF-II were compared to the translated worm genome sequence, this largeset of insulin superfamily members was not detected. However, when thesearch was carried out with the conserved signature residues shown belowthat are the hallmark of the insulin superfamily (SEQ ID NOS: 115, 116),as now defined, we detected a number of novel insulin molecules.

[0208] Conserved Insulin Motifs

[0209] 1 LCGXXLVEALXXVCGXRGFFYTPKTRRKRGIVEQCCXXXCXXXQL EXYCN 50 (SEQ IDNO: 115); and

[0210] 1 aanqrLCGRHLADALYFVCGNRGFfyspkgGIVEECCHNPCTLYQLE NYCn 51 (aninsulin superfamily consensus from the Blocks database atwww.blocks.fhcrc.org; SEQ ID NO: 116).

[0211] The insulin superfamily signature residues were assembled using aset of vertebrate insulins and IGF-I and II proteins as well as silkmoth bombyxin (a distant insulin relative) and a Limulus insulinsuperfamily member. The use of superfamily signature amino acidpositions to detect distant relatives in databases is a more definitiveapproach to ascertaining gene superfamily members than simple searcheswith single family members.

[0212] Using these motifs, eight novel C. elegans insulin superfamilymembers were identified (SEQ ID NOS: 117-124), the coding sequences ofwhich are shown in FIG. 28. In this Figure, the family members are namedfrom the cosmid genomic DNA sequences from which they were detected. Allof these insulins have A and B peptide homology to the insulinsuperfamily, and some of them have conserved dibasic processing sitesthat would mediate processing of the intervening unconserved C peptide.These genes are widely distributed on the C. elegans genome, althoughsome are clustered (for example, ZK75.1, ZK75.2, ZK75.3, and ZK84.6).More distant insulin relatives may exist, but these are likely to engagereceptors other than DAF-2.

[0213] Of the isolated insulin superfamily members, F13B12 was mostclosely related to human insulin and IGF-I, II. This was especiallyobvious from a PILEUP analysis in which a phylogenetic tree of proteinsuperfamily members was constructed (FIGS. 29 and 30). The insulinproduct of F13B12 clustered more closely to the mammalian insulin andIGF-I,II proteins than to other distant relatives like relaxin. Relaxindefined the most distantly related insulin superfamily member in theanalysis, and it appeared to engage a tyrosine kinase receptor distinctfrom the insulin receptor.

[0214] These insulin-like hormones are expected to subserve thelongevity, dauer arrest, and/or metabolic effects of DAF-2 signaling.For example, each of these insulin superfamily members are expected toengage the DAF-2 receptor, leading to a result in which a mutation indaf-2 “sums” the functions of these eight or more insulin-like signals.

[0215] An analysis of the F13B12 insulin-like hormone is consistent withthis view (Tables II-VI). First, as shown below, increasing the dose ofthe F13B12 insulin-like hormone potently modulates dauer arrest, both inanimals carrying weak daf-2 or weak daf-7 mutations, and in animalscarrying defects in synaptic components likely to mediate insulinrelease in C. elegans (unc-64). TABLE II High copy F13B12(ins) enhancesthe Daf-c phenotype of daf-2(e1365) at 20° C. Phenotype of progency (%)3transgenic non-transgenic Parental non- non- Genotype dauer dauer Ndauer dauer N F13B12 transgenic: daf-2(e1365); mgex309 89.0 11.0 163 2.397.7 213 daf-2(e1365); mgex310 90.5 9.5 220 2.6 97.4 115 Controltrangenic: daf-2(e1365); mgex315 1.8 98.2 283 0.5 99.5 184

[0216] TABLE III High copy F13B12(ins) maternally suppresses the Daf-cphenotype of daf-7(e1372) at 25° C. Phentype of progency (%) 3non-transgenic (but transgenic parent was) Parental non- non- Genotypedauer dauer N dauer dauer N F13B12 trangenic: daf-7(e1372); mgex299 31.468.6 236 2.9 97.1 172 daf-7(e1372); mgex301 16.8 83.2 250 0 100 122Control transgenic: daf-7(e1372); mgex312 100 0 78 100 0 60

[0217] TABLE IV High copy F13B12(ins) maternally suppresses the Daf-cphenotype of daf-7(e1372) at 15° C. Phenotype of progency (%)non-trangenic (but transgenic parent was) Parental non- non- Genotypedauer dauer N dauer dauer N F13B12 transgenic: daf-7(e1372); mgex299 1.498.6 73 0.3 99.7 343 daf-7(e1372); mgex301 0.5 99.5 194 0 100 278Control trangenic: daf-7(e1372); mgex312 26.4 73.6 91 25.6 74.4 39

[0218] TABLE V High copy F13B12(ins) promotes recovery of unc-64(e246)dauers at 27° C. Phenotype of progeny (%) Day 3 Day 2 TrangenicNon-transgenic Parental Non- Non- Non- Genotype Dauer dauer Dauer dauerDauer dauer N F13B12(ins) transgenic: unc-64(e246); mgex299 91.0 9.010.4 56.6 23.6 9.4 106 unc-64(e246); mgex301 75.3 24.7 22.9 51.1 18.77.3 96 Control transgenic: unc-64(e246); mgex3312 88.9 11.1 54.3 10.629.8 5.3 208

[0219] TABLE VI High copy F13B12(ins) enhances the Daf-c phenotype ofunc-64(e246) at 15° C. Phenotype of progeny (%) transgenicnon-transgenic Parental non- non- Genotype dauer dauer N dauer dauer NF13B12 transgenic: unc-64(e246); mgex299 23.2 76.8 185 0 100 170unc-64(e246); mgex301 36.0 64.0 75 0 100 77 Control trangenic:unc-64(e246); mgex312 0 100 177 0 100 134

[0220] A genetic analysis has shown that high F13B12 insulin-likehormone signaling can suppress dauer arrest induced by daf-7 mutationsor decreases in synaptic signaling, but can enhance dauer arrest causedby decreases in daf-2 signaling. Thus, the F13B12 insulin-like hormonemay act synergistically with DAF-7 signals, like the DAF-2 receptor, butmay interfere with the secretion or activity of another DAF-2 ligand.These genetic data strongly implicate the F13B12 insulin-like hormone inDAF-2 signaling.

[0221] In addition, the expression pattern of a promoter fusion of theF13B12 insulin-like hormone to GFP is also consistent with the geneticresults. In these experiments, GFP was expressed in several headneurons, including ASJ and ASH, a pair of pharyngeal neurons, withprocesses that looked most like NSM, and three tail neurons. Thefull-length GFP looked similar but very faint. Worms expressing thefull-length GFP lived longer than wild type. Interestingly, the NSMneuron had dense core vesicles by EM analysis, which is also true ofbeta cells of the pancreas. Pancreatic beta cells are also neuronal incharacter; they use synaptic components for insulin vesicle release, aresynaptically connected to the autonomic nervous system, and areelectrically active. Sulfonyl ureas, which are used to increase insulinrelease, act by regulating the activity of K channels in beta cells,much the way K channels regulate excitability in other neurons. Finally,the NSM neuron is a part of the C. elegans enteric nervous system, justlike the pancreas in mammals. Accordingly, the expression and functionalanalysis of the F13B12 insulin-like hormone is highly supportive of itsrole in insulin-like control of worm metabolism and aging.

[0222] Although the F13B12 insulin-like hormone is the closest C.elegans homologue to insulin, it is likely that many or all of theseinsulin superfamily members engage the DAF-2 receptor to regulate theiractivity. For example, they are more closely related to insulin than tothe ligands of the other growth factor receptors present in the wormgenome. These distinct insulin superfamily ligands could regulate DAF-2at distinct times or places, or act antagonistically or synergisticallyto the F13B12 insulin-like hormone. Some of these insulin-like hormonesmay regulate metabolism, like insulin, whereas others may regulate dauerarrest or longevity. Thus, the daf-2 mutant phenotype that results fromloss of the receptor for these many hormones may be a composite loss ofmany hormonal signals. Consistent with such a model, neuronal expressionof the DAF-2 receptor in a daf-2 null mutant has been found tocomplement the dauer arrest phenotype of a daf-2 mutant but not themetabolic or aging defects. Accordingly, one DAF-2 ligand may beexpressed in or near the brain to control dauer arrest, but otherligands may impinge on DAF-2, for example, in non-neuronal cells, tocontrol metabolism and aging.

[0223] By this view, loss of only one of the insulin-like hormones maycause only a subset of the daf-2 mutant phenotype, for example, onlyincreased longevity or only metabolic dysregulation. These C. elegansinsulin superfamily members may, for example, subserve the longevity orsenescence function of DAF-2 receptor signaling, and an increase in sucha hormone activity late in life may actually mediate the increase inDAF-2 activity that causes senescence. Conversely, if any of theseinsulin-like proteins have antagonistic effects on DAF-2, any decline intheir activity late in life could mediate senescence. Application ofonly one hormone by injection or germ line therapy could therefore beused to target, for example, aging without any effects on metabolism.

[0224] In addition, since the F13B12 insulin-like hormone is adetectable worm homologue of insulin, it is possible that the other 7worm insulins also have human homologues that are more closely relatedto their nematode counterparts than they are to each other. In fact thedivergence of the F13B12 insulin-like hormone from insulin and IGF-I andIGF-II gives a measure of how much divergence may be expected for themammalian homologues of the other insulin superfamily members. TheF13B12 insulin-like hormone is slightly more closely related to IGF-IIthan insulin or IGF-I, but these three genes are probably duplicated anddiverged homologues of a F13B12 homologue in the common ancestor of C.elegans and Homo sapiens. In fact, it is a current rule of thumb thatmany gene families in mammals have 4 times as many members as in C.elegans. For example, there are 4 Hox clusters in mammals and only onein C. elegans. Similarly, there are 3 known DAF-2 receptor homologuesand DAF-16 transcription factor homologues in mammals (it is likely thatthe fourth mammalian member of these gene families will become knownwhen the full mammalian genome sequence is finished). Thus, it isreasonable to expect that, for every insulin like protein in C. elegans,there may be four in mammals, or a total of 24 for the family of 8 shownabove. In addition, since the F13B12 insulin-like hormone is expressedin only a few neurons, it is possible that the other insulin superfamilymembers are similarly expressed in a small set of neurons, and that thehuman homologues may be expressed in only rare regulatory cell types.

[0225] The insulin-like hormones described herein, as well as theirhuman homologues, provide valuable candidate regulators of senescence.For example, if human senescence is triggered by a decline in aninsulin-like longevity hormone, in analogy to how puberty is triggeredby a timed change in sexual maturation hormones, it may prove possibleto regulate the aging process in the same way that sexual maturation canbe regulated by hormone treatment. In addition, the C. elegans aginghormones may reveal which human genes have such a function. Becausedaf-2 mutations cause longevity increases in a manner analogous tocaloric restriction in mammals, it is possible that caloric restrictionin mammals regulates the level of an insulin-like hormone that in turnengages the insulin or IGF-I, II receptors. Such a hormone may not havebeen detected if its level is very low or if it signals over a shortrange. However, once the human genome sequence is complete, thedetection of human homologues to the C. elegans superfamily memberslisted above will become a trivial matter of database searching. In thisway, the determination of the function of the worm homologue function inlongevity or growth arrest or metabolism control will supply valuablefunctional information about the activity of human homologues.

[0226] The effect of the C. elegans insulin-like proteins on longevity,metabolism, or growth arrest may be readily determined by a combinationof high copy studies, as shown above for the F13B12 insulin-likehormone, as well as by using RNA inhibition and knockout strategies toinhibit the activities of these genes. The C. elegans strains are thentested for interactions with dafpathway mutants, for example, as shownfor the F13B12 insulin-like hormone above, and for longevity effects bystandard techniques.

[0227] The human proteins that regulate longevity may be detected by acombination of database searches and genetic complementation of wormRNAi or gene knockout mutants (for example, as described herein), aswell as by high copy effects of human genes on worm longevity andmetabolic control.

[0228] Because these human proteins are hormones, they may be used todirectly regulate human longevity, for example, by injection into thebloodstream. Depending on the particular hormone and its effects, thehormones themselves may cause increased longevity, or they may bemodified to generate dominant interfering hormones (for example, byengineering chimeras between the insulin superfamily members). Thefunction of these proteins upon injection into the bloodstream may bepredicted from their function in C. elegans, for example, as ascertainedby transgenic analysis. Because of their effects on longevity, the humanhomologues of these C. elegans insulin-like endocrine signals haveimportant applications in preventing or retarding the aging process.

[0229]C. elegans Akt/PKB Transduces Insulin Receptor-like Signals fromAGE-1 Phosphoinositide-3-OH Kinase to the DAF-16 Transcription Factor

[0230] An insulin receptor-like signaling pathway regulates C. elegansmetabolism, development, and longevity (Kimura et al., Science277:942-946, 1997). In response to a secreted pheromone, wild typeanimals arrest development at the dauer stage with a concomitant switchto fat storage metabolism in the intestine and hypodermis, increasedlifespan, and remodelling of many tissues (Kimura et al., Science277:942-946, 1997; Riddle and Albert, in C. elegans II, eds. Riddle, D.L., Blumenthal, T., Meyer, B. J. & Priess, J. R., Cold Spring HarborLaboratory Press, Cold Spring Harbor, N.Y., pp. 739-768, 1997).Mutations in the insulin/IGF-I receptor homolog daf-2 (Kimura et al.,Science 277:942-946, 1997) or in the phosphoinositide-3-OH kinase (PI3K)homolog age-1 (Morris et al., Nature 382:536-539, 1996) causeconstitutive arrest at the dauer stage; genetic analysis is consistentwith AGE-1 functioning downstream of DAF-2 (Gottlieb and Ruvkun,Genetics 137:107-120, 1994; Larsen et al., Genetics 139:1567-1583,1995). Mutations in the Fork head transcription factor DAF-16 completelysuppress the dauer arrest, metabolic shift, and longevity phenotypes ofdaf-2 and age-1 mutants (Gottlieb and Ruvkun, Genetics 137:107-120,1994; Larsen et al., Genetics 139:1567-1583, 1995; Kenyon et al., Nature366:461-464, 1993; Ogg et al., Nature 389:994-999, 1997; Lin et al.,Science 278:1319-1322, 1997), indicating that DAF-16 is a negativelyregulated downstream target of C. elegans insulin receptor signaling.Molecules that couple the DAF-2 insulin receptor protein and AGE-1 PI3Kto the DAF-16 transcription factor have not been identified by previousextensive genetic screens. While biochemical studies have suggested thatthe mammalian Akt/PKB (also known as RAC) serine/threonine kinase maytransduce signals from PI3Ks associated with receptor tyrosine kinases(Franke et al., Cell 81:727-736, 1995; Burgering and Coffer, Nature376:599-602, 1995; Cross et al., Nature 378:785-589, 1995), such as theinsulin receptor to downstream effectors, this has not been demonstratedby genetic analysis of signaling pathways in whole organisms. Weestablished the action of C. elegans Akt/PKB in the DAF-2 insulinreceptor-like signaling pathway by the genetic identification of anactivating Akt/PKB mutation and by genetic analysis of Akt/PKBinactivation and overexpression.

[0231] An activating mutation (mg144) in akt-1, one of two C. elegansAkt/PKB homologs, was identified in a genetic screen for mutations thatsuppress the dauer arrest phenotype of the age-1(mg44) null mutant(Morris et al., Nature 382:536-539, 1996). This screen was designed toisolate reduction of function mutations in molecules negativelyregulated by PI3K signaling, or gain of function mutations in moleculespositively regulated by PI3K signaling. Among 10 independent suppressormutations isolated in a screen of 3800 haploid genomes, in addition tothe activating akt-1 mutation, we also isolated multiple alleles of apreviously known negatively regulated target, daf-16 (Gottlieb andRuvkun, Genetics 137:107-120, 1994; Larsen et al., Genetics139:1567-1583, 1995) and one other suppressor that maps to the daf-16interval between lin-11 and unc-75, suggesting that the screen revealedgenes that act in this insulin-like signaling pathway. Another dominantmutation, mg142, that suppresses multiple age-1 alleles and sixmutations that vary in their ability to suppress multiple age-1 alleleswere also isolated in the screen.

[0232] The mg144 mutation suppresses the three age-1 alleles tested,including two classes of nonsense alleles and one missense substitution(Ala845Thr) in a conserved region of PI3K (Morris et al., Nature382:536-539, 1996). mg144 is completely dominant for suppression of thedauer constitutive phenotype of age-1(mg44) (75.1% of the progeny ofage-1(mg44); mg1441+animals developed as non-dauers, and 24.9% arrestedat the dauer stage, N=774). On its own, mg144 does not have any obviousphentoypes; it moves normally, has a normal vulva and brood size, andmakes dauers on starved plates and on plates treated with pheromone.Thus mg144 does not activate the AGE-1 PI3K signaling pathway to thepoint that normal dauer arrest is affected but does activate the pathwaysufficiently to alleviate the requirement for AGE-1 PI3K outputs.

[0233] Using suppression of the dauer constitutive phenotype ofage-1(mg44), mg144 was mapped to a region on chromosome V within 1.3 muof the polymorphic STS marker bP1 (FIG. 31). From the C. elegans genomesequence in this 1.3 mu region, we identified a C. elegans Akt/PKBhomolog which we named akt-1 (FIG. 31). Because an activating mutationin Akt/PKB is a good candidate to be a genetically dominant suppressorof an age-1 PI3K null mutant, we determined the akt-i DNA sequence inthe mg144 strain by PCR amplification and direct sequencing. The akt-1gene in the mg144 mutant strain was shown to bear an Ala183Thrsubstitution (FIG. 34). akt-1 is differentially spliced within theconserved kinase domain to generate the akt-1a and akt-1b isoforms withdistinct kinase domain subregions IV, V, and VI (92% identical, 238/258amino acids over the entire kinase domain; 69% identical, 44/64 aminoacids in the differentially spliced region). akt-1a is 58% identical tohuman Akt/PKBa (FIG. 33 and 34). akt-1 has a pleckstrin homology domain,kinase domain, and the two phosphorylation sites necessary for Akt/PKBactivation (Alessi et al., EMBO J 15:6541-6551, 1996) which are thehallmarks of the Akt/PKB family (FIG. 34). The next most closely relatednon-Akt/PKB mammalian kinase is rat PKCβ1 which is 38% identical toakt-1a. The akt-1(mg144) mutation is present in both splice forms ofakt-1 and is located in a region of the protein that links theN-terminal pleckstrin homology domain to the C-terminal kinase domain.This mutation is in a region that is not conserved between C. elegansand mammalian Akt/PKB. This mutation may reveal a negative regulatoryregion on akt-1 because the mg144 allele is an activating mutation (seebelow).

[0234] To confirm that the mg144 suppression of age-1 that isgenetically linked to akt-1 was due to a mutation in akt-1, we used areverse genetic assay termed RNA interference (RNAi) (Fire et al.,Nature 391:806-811, 1998; Rocheleau et al., Cell 90:707-716, 1997; Zhanget al., Nature 390:477-484, 1997) to decrease akt-1 gene activity in anage-1(mg44); akt-1(mg144) strain. If a mutation in akt-1 was responsiblefor the suppression of age-1 observed in this strain, RNAi of akt-1 inthis strain should revert the suppression phenotype and result in adauer constitutive phenotype. This experiment was conceptually similarto the classic genetic arguments that show that a cis-acting loss offunction mutation can revert a gain of function mutation in the samegene. Inhibition of akt-1 activity in an age-1(mg44); akt-1(mg144)strain reverted the akt-1(mg144) suppression phenotype, indicating thatthe mg144 activating mutation was a lesion in the akt-1 locus.

[0235] We identified another Akt/PKB homolog in the nearly complete C.elegans genome sequence (Wilson et al., Nature 368:32-38, 1994) which wenamed akt-2 (FIG. 32). akt-1 and akt-2 are more closely related to eachother (66% identity between akt-1a and akt-2 overall) than to any otherAkt/PKB homolog (FIG. 33). akt-2 is 55% identical to human Akt/PKBaoverall and 35% identical to rat PKCβ1 overall. Interestingly, akt-2only has the Thr308 phosphorylation site that is necessary for Akt/PKBactivation by PDK1 (Alessi et al., Current Biology 7:261-269, 1997;Stokoe et al., Science 277:567-570, 1997) but not the Ser473phosphorlyation site (Alessi et al., EMBO J. 15:6541-6551, 1996) (FIG.34) and yet clearly functions in the insulin-like signaling pathway (seebelow).

[0236] Reduction of both akt-1 and akt-2 activities revealed that theytransduce insulin-like signals from the AGE-1 PI3K to the DAF-16forkhead transcription factor. Inhibition of either akt-1 or akt-2activity by RNAi did not cause dauer arrest. However, simultaneousinhibition of both akt-1 and akt-2 activities caused nearly 100% arrestat the dauer stage. We concluded that Akt/PKB signaling from eitherakt-1 or akt-2 is sufficient for reproductive development. This resultindicates that akt-1 and akt-2 can function redundantly for dauerformation in C. elegans and raises the possibility that variousmammalian Akt/PKB isoforms could function redundantly as well.Significantly, the constitutive dauer arrest induced by inhibition ofboth akt-1 and akt-2 is fully suppressed by a null mutation in daf-16(Ogg et al., Nature 389:994-999, 1997) but is not suppressed by a nullmutation in the Smad homolog daf-3 (Patterson et al., Genes &Development 11:2679-2690, 1997) which confirms its placement in theDAF-2/AGE-1/DAF-16 signaling pathway. Because a null mutation in daf-16alleviates the need for C. elegans Akt/PKB signaling, the primaryfunction of AKT-1 and AKT-2 is to antagonize DAF-16. Interestingly,DAF-16 contains four consensus sites for phosphorylation by Akt/PKB(Alessi et al., FEBS Letters 399:333-338, 1996) and three of these sitesare conserved in the human DAF-16 homologs AFX, FKHR, and FKHRL1. AKT-1and AKT-2 may exert their negative regulatory effect by directlyphosphorylating DAF-16. Shown below are comparisons of AFX, FKHR, andDAF-16, indicating the conservation between the consensusphosphorylation sites. The AKT sites indicated are located downstreamand upstream, respectively, of the Forkhead domain (SEQ ID NOS:161-169). Score = 151 (68.4 bits), Expect = 1.9e−140, Sum P (8)= 1.9e−140 Identities = 28/54 (51%), Positives = 38/54 (70%) AFX: 226SPVGHFAKWSGSPCSRNREEADMWTTFRPRSSSNASSVSTRLSPLRPESEVLAE 279SP   F+KW  SP S + ++ D W+TFRPR+SSNAS++S RLSP+  E + L E FKHR: 287SPGSQFSKWPASPGSHSNDDFDNWSTF

NASTISGRLSPIMTEQDDLGE 340 DAF-16a                         SFRPRTQSNLSIPGSSS                                                       Score = 132 (59.8 bits), Expect = 1.9e−140, Sum P (8) = 1.9e−140Identities = 22/42 (52%), Positives = 28/42 (66%) AFX: 7KAAAIIDLDPDFEPQSRPRSCTWPLPRPEIANQPSEPPEVEP 48+A  ++++DPDFEP  RPRSCTWPLPRPE +   S      P FKHR: 3EAPQVVEIDPDFEPLPRPRSCTWPLPRPEFSQSNSATSSPAP 44 DAF-16TFMNTPDDVMMNDDMEPIPRDRCNTWPMRRPQLEPPLNSSP 177T  ++P+ V ++ D EP+PR R  TWP+ RP++  + ++++

[0237] We have shown that human AKT will phosphorylate C. elegans DAF-16and that this phosphorylation is dependent on these sites. Upon mutationof the serine or threonine in these sites to alanine, in vitrophosphorylation of DAF-16 (or fragments of DAF-16) is abolished. It isexpected that the lack of akt input to DAF-16 in these mutant nematodeswill result in dauer arrest, just like animals lacking akt-1/akt-2 geneactivity.

[0238] The above genetic results show that Akt/PKB is the major outputof PI3K signaling and implicate a transcription factor downstream targetfor the Akt/PKB kinase. Because mutations in daf-16 suppress akt-1 andakt-2 reduction of function, it is likely that DAF-16 represents a majorsignaling output of Akt/PKB in C. elegans insulin-like signaling.Akt/PKB has been implicated in mammalian insulin receptor signaling thatlocalizes glucose transporters to the plasma membrane (Kohn et al., J.Biol. Chem. 271:31372-31378, 1996) and has been shown to regulateglycogen synthesis via direct phosphorylation of GSK-3 (Cross et al.,Nature 378:785-589, 1995), two events which are not transcriptionallyregulated. While there also may be such Akt/PKB outputs in C. elegans,the DAF-16 Fork head transcription factor represents the major output ofDAF-2/AGE-1/AKT-1/AKT-2 insulin receptor-like signaling (Ogg et al.,Nature 389:994-999, 1997). Similarly Akt/PKB action in the insulin/IGF-Ianti-apoptotic pathway (Dudek et al., Science 275:661-665, 1997;Kauffinann-Zeh et al., Nature 385:544-548, 1997; Kulik et al., Mol. CellBiol. 17:1595-1606, 1997 24-26) may also converge on transcriptionfactors related to DAF-16.

[0239] The normal requirement of age-1 activity for reproductivedevelopment is also bypassed by increased gene dosage of wild typeakt-1. Transgenic age-1(mg44) animals carrying a 7.3 kb akt-1(+) genomicregion can grow reproductively rather than arrest at the dauer stage.Greater than 75% of age-1(mg44) animals that contain the akt-1(+)transgene at high copy bypass dauer arrest while non-transgenicage-1(mg44) animals never bypass dauer arrest. This rescue is dependenton a conserved lysine residue implicated in mammalian AKT/PKB kinaseactivity (Franke et al., Cell 81:727, 1995). In a similar experimentwith age-1(mg44) animals carrying the same genomic region amplified fromakt-1(mg144) at high copy, the transgenic animals bypassed dauer arrestat a similar frequency. The age-1(mg44) animals carrying theakt-1(mg144) transgene at low copy bypass dauer arrest more frequentlythan the age-1(mg44) animals carrying the akt-1(+) transgene at low copy(approximately 85% of age-1(mg44) animals carrying akt-1(mg144)transgene bypass dauer compared to 38% of age-1(mg44) animals carryingthe akt-1(+) transgene). These results indicate that the same 7.3 kbgenomic region amplified from the akt-1(mg144) strain is a more potentsuppressor of age-1(mg44) than the akt-1(+) transgene. These data mapmg144 to the 7.3 kb region of akt-1 that includes the Alal83Thrsubstitution in AKT-1. However, while multiple independent akt-1 (mg144)transgenes are more potent suppressors of age-1(mg44) than akt-1(+)transgenes, which suggests that more akt-1 gene activity is generated byakt-1(mg144), there is significant variation in the penetrance ofsuppression observed with different transgenes. In addition, even thoughakt-1(+) transgenes confer suppression of age-1(mg44) that is notobserved with chromosomal akt-1(+), the penetrance of suppression ofage-1(mg44) by either akt-1(+) or akt-1(mg144) transgenes is less thanfrom akt-1(mg144)1+heterozygotes or akt-1(mg144) homozygotes. This maybe due to mosaicism of akt-1 gene expression from transgenic arrays or asaturation of akt-1 gene function by high gene dosage. These data alsosuggest that the mutation may act by increasing AKT-1 abundance orstability, thus conferring the ability to grow in the absence of age-1signaling.

[0240] Null mutations in age-1 cause dauer arrest as does inactivationof akt-1 and akt-2 by RNAi. This indicates that akt-1(+), akt-2(+), andage-1(+) are required for reproductive development. Because the dominantallele akt-1(mg144) also promotes reproductive growth by virtue of itsability to suppress the dauer constitutive phenotype of age-1 nullmutants, it functions similarly to akt-1(+) and akt-2(+). Thusakt-1(mg144) is an activating mutation, as opposed to a loss of functionor dominant negative mutation in akt-1. In addition, the fact that bothakt-1(mg144) and providing additional copies of the akt-1(+) genesuppress an age-1 null mutant is consistent with akt-1(mg144) being anactivating mutation.

[0241] Because akt-1 and akt-2 function redundantly to repress dauerformation we asked whether overexpression of akt-2(+) could also bypassthe normal requirement of AGE-1 PI3K signaling. age-1(mg44) animalscarrying the akt-2(+) transgene arrested as dauers while age-1(mg44)animals carrying the akt-1(+) transgene bypassed dauer. Thus, eitherbecause of differences in the AKT-2 protein or differences in proteinexpression, high gene dosage of akt-2 is not able to bypass the usualrequirement for AGE-1 PI3K signaling.

[0242] akt-1(mg144) suppresses the dauer constitutive phenotype of threeage-1 alleles. Because age-1(mg44) is a null mutant, these data stronglysuggest that akt-1 acts downstream of age-1 and demonstrates that thebiochemical ordering of PI3K upstream of Akt/PKB kinase is also true inan intact organism. AGE-1 is the only PI3K homolog in C. elegans of thetype regulated by tyrosine kinase receptors. Significantly, our resultsdemonstrate that C. elegans Akt/PKB gene activity is not strictlydependent on upstream age-1 activity if Akt/PKB activity is increasedbecause akt-1(mg144) as well as akt-1(+) overexpression suppress nullmutations in AGE-1 PI3K. This is comparable to the suppression bydaf-16(m27), a reduction of function allele (Lin et al., Science278:1319-1322, 1997), and daf-16 null alleles (Ogg et al., Nature389:994-999, 1997).

[0243] A mutation in daf-2 is suppressed more poorly by akt-1(mg144)than by a reduction of function mutation in daf-16. The age-1 allelessuppressed by akt-1(mg144) are null (Morris et al., Nature 382:536-539,1996) whereas daf-2(e1370) is a temperature sensitive mutation in thekinase domain (Kimura et al., Science 277:942-946, 1997). This daf-2allele is completely suppressed by many daf-16 alleles, including nullalleles (Gottlieb and Ruvkun, Genetics 137:107-120, 1994; Larsen et al.,Genetics 139:1567-1583, 1995; Ogg et al., Nature 389:994-999, 1997).This result, in comparison to the robust suppression of age-1 mutationsby akt-1(mg144), suggests that akt-1 is a major output of AGE-1signaling and one of multiple outputs of DAF-2 signaling. In addition,because akt-1(mg144) can bypass the need for AGE-1 PI3K signaling butnot for DAF-2 insulin receptor-like signaling, akt-1(mg144) defines abifurcation in the signaling pathway downstream of daf-2. It is likelythat age-1 and akt-1 constitute one major signaling pathway from DAF-2and that other, as yet unidentified genes, constitute one or moreparallel pathways. These pathways converge downstream of AGE-1 and at orupstream of the DAF-16 Fork head transcription factor and negativelyregulate its activity, since loss of function mutations in daf-16completely suppress both daf-2 and age-1 mutations (Gottlieb and Ruvkun,Genetics 137:107-120, 1994). Because a decline in AGE-1 PI3K orAKT-1/AKT-2 signaling induces dauer arrest in the presence of signalingfrom this parallel pathway, both are necessary for reproductivedevelopment. The genetic evidence for multiple DAF-2 insulinreceptor-like outputs demonstrate that biochemical studies showing thatparallel PI3K, ras, SHP2, and other signaling outputs are activated bythe insulin receptor in mammals (Kahn, Diabetes 43:1066-1084, 1994) arerelevant to insulin receptor-like signaling in intact organisms.

[0244] In addition, a mutation in daf-2 is suppressed more poorly byakt-1(mg144) than by a reduction of function mutation in daf-16. Theage-1 alleles suppressed by akt-1(mg144) are null (Morris et al. (1996)Nature 382:536-539) whereas daf-2(e1370) is a temperature sensitivemutation in the kinase domain (Kimura et al. (1997) Science277:942-946). This daf-2 allele is completely suppressed by many daf-16alleles, including null alleles (Gottlieb and Ruvkun (1994) Genetics137:107-120; Larsen et al. (1995) Genetics 139:1567-1583; Ogg et al.(1997) Nature 389:994-999). This result, in comparison to the robustsuppression of age-1 mutations by akt-1 (mg144), suggests that AKT-1 isa major output of AGE-1 signaling and one of multiple outputs of DAF-2signaling.

[0245] Overexpression of either akt-1(+) or akt-1(mg144) can bypass theneed for DAF-2 signaling while overexpression of akt-2(+) or akt-1(KD)does not alleviate the need for DAF-2 signaling. However, akt-1(+) andakt-1(mg144) transgenes are more efficient suppressors of the dauerconstitutive phenotype of age-1(mg44) than of daf-2(e1370). Thissupports the model that AKT-1 is a primary output of AGE-1 signaling butnot DAF-2 signaling.

[0246] Reduction of zygotic age-1 activity increases C. elegans lifespangreater than two-fold (Morris et al., Nature 382:536-539, 1996; Larsenet al., Genetics 139:1567-1583, 1995; Klass, Mech. Ageing Dev.22:279-286, 1983). Mutations in daf-16 suppress this lifespan increase(Larsen et al., Genetics 139:1567-1583, 1995; Dorman et al., Genetics141:1399-1406, 1995). akt-1(mg144) does not suppress the age-1(mg44)induced increase in lifespan (for the following strains, mean lifespans,maximum lifespan are given: N2 12 days, 16 days, N=28; sqt-1(sc13)age-1(mg44) 18 days, 36 days, N=20; sqt-1(sc13) age-1(mg44);akt-1(mg144) 22 days, 38 days, N=36; daf-16(m27); sqt-1(sc13)age-1(mg44) 14 days, 16 days, N=32). Thus akt-1(mg144) bypasses the needfor AGE-1 signaling in reproductive development but does not activatenormal aging pathways. It is possible that akt-1(mg144) does notsubserve all the functions of the wild type akt-1 or akt-2. akt-2 orother as yet unidentified downstream effectors of age-1 may be thepertinent signaling molecules for lifespan regulation.

[0247] The expression patterns of both akt-1 and akt-2 were examined intransgenic animals containing a translational fusion of each genomiclocus to Green Fluorescent Protein (GFP) (Chalfie et al., Science263:802-805, 1994). The GFP fusion proteins contain the entire genomiccoding region from either akt-1 or akt-2, including 5′ upstreamregulatory sequence, fused in frame at the C-terminus to GFP. TheAKT-1/GFP construct is sufficient to suppress the dauer constitutivephenotype of age-1(mg44) while the AKT-2/GFP construct is not. Thisresult is not unexpected because increased gene dosage of akt-2(+) doesnot suppress age-1(mg44) while increased gene dosage of akt-1(+) does.AKT-1/GFP expression is first observed in late embryos and is maintainedthroughout the life of the animal. In post-embryonic animals, AKT-1/GFPis expressed in the majority of head neurons including sensory neurons.Expression is also observed in motor neurons of the ventral and dorsalnerve cord, neuronal commissures and processes throughout the body, andthe tail neurons. The fusion protein is localized throughout the cellbody and axonal and dendritic processes of neurons but is usuallyexcluded from the nucleus. Additional tissues which consistently expressAKT-1/GFP include neurons and muscle cells of the pharynx, the rectalgland cells, and the spermatheca. AKT-1/GFP expression was observed morevariably in a variety of cell types including hypodermis, intestine,muscle, some of the P cell descendants that form the vulva, and in theexcretory canal.

[0248] Consistent with redundant roles of akt-1 and akt-2, an AKT-2/GFPfull length protein fusion gene is expressed at the same times asAKT-1/GFP and in the same tissues that express AKT-1/GFP, althoughAKT-2/GFP seems to be less abundant. In dauers induced by starvation oncrowded plates, AKT-1/GFP and AKT-2/GFP expression does not differdramatically from their expression during reproductive growth. Theseexpression patterns are consistent with AKT-1 and AKT-2 functioningeither in secretory neurons to regulate dauer arrest and metabolic shiftor in the target tissues that are remodeled during dauer formation suchas the pharynx, hypodermis, and intestine.

[0249] The activating mutation akt-1(mg144), as well as overexpressionof akt-1(+), bypasses the normal requirement for AGE-1 PI3K signaling inthe DAF-2 insulin receptor-like signal transduction pathway. Theseresults demonstrate that C. elegans Akt/PKB gene activity is notstrictly dependent on upstream age-1 activity if Akt/PKB activity isincreased. In the almost complete C. elegans genome sequence, AGE-1 isthe only PI3K homolog of the type known to generate 3-phosphoinositides.If AGE-1 is the only protein able to generate 3-phosphoinositides in C.elegans, these results suggest that, while normal AKT-1 signaling isdependent on 3-phosphoinositides, AKT-1 can become activated in theirabsence if gene dosage is increased or the mg144 mutation is introduced.

[0250] Importantly, either activated akt-1 or higher akt-1(+) genedosage does not efficiently suppress mutations in the DAF-2 insulinreceptor suggesting that age-1 and akt-1 constitute one major signalingpathway from DAF-2 and that other, as yet unidentified genes, constituteone or more parallel pathways. These pathways most likely converge onthe DAF-16 Fork head transcription factor and negatively regulate itsactivity, since loss of function mutations in daf-16 completely suppressboth daf-2 and age-1 mutations (Gottlieb and Ruvkun (1994) Genetics137:107-120; Larsen et al. (1995) Genetics 139:1567-1583), as well asinactivation of akt-1 and akt-2 signaling.

[0251] While AKT-1 and AKT-2 appear to function redundantly intransduction of DAF-2/AGE-1 signals, increased akt-1 gene dosage is amuch more potent suppressor of age-1 null mutations than increased akt-2gene dosage. A major distinction between AKT-1 and AKT-2 is that AKT-1bears two distinct phosphorylation sites (corresponding to Thr308 andSer473 in human Akt/PKBa) that are necessary for activation of Akt/PKBby upstream growth factor inputs (Alessi et al. (1996) EMBO J.15:6541-6551; Alessi et al. (1996) FEBS Letters 399:333-338) while AKT-2only has the Thr308 phosphorylation site. In mammals, Akt/PKB isphosphorylated at Thr308 by PDK1 and at Ser473 by the as yet unpurifiedPDK2 (Alessi et al. (1997) Current Biology 7:261-269; Stokoe et al.(1997) Science 277:567-570). Thus AKT-1 may couple to a PDK2-like kinasewhereas AKT-2 cannot do so. AKT-1 and AKT-2 may also differ in otherkinase inputs or in their substrates. Interestingly, at lowertemperatures, the akt-2(+) transgene can supply sufficient Akt/PKBactivity to weakly suppress the dauer arrest caused by age-1(mg44).Temperature is a major modulator of dauer arrest (Riddle and Albert(1997) Genetic and Environmental Regulation of Dauer Larva Development.In C. elegans II (ed. D. L. Riddle, T. Blumenthal, B. J. Meyer and J. R.Priess), pp. 739-768, Cold Spring Harbor Laboratory Press, Cold SpringHarbor, N.Y.). The penetrance of dauer arrest in most dauer constitutivemutants is increased at high temperatures (Riddle and Albert (1997)Genetic and Environmental Regulation of Dauer Larva Development. In C.elegans II (ed. D. L. Riddle, T. Blumenthal, B. J. Meyer and J. R.Priess), pp. 739-768, Cold Spring Harbor Laboratory Press, Cold SpringHarbor, N.Y.), suggesting that some signals in the pathway are enhancedat low temperature. Thus at low temperatures perhaps PDK1 signaling toAKT-1 and AKT-2 or signaling in pathways parallel to AGE-1/AKT-1/AKT-2are enhanced, allowing increased akt-2(+) gene dosage to weakly bypassthe normal requirement for AGE-1 PI3K signaling.

[0252] Insulin-like and TGF-P neuroendocrine signals regulate whetheranimals arrest at the dauer stage or grow to reproductive adults (Kimuraet al. (1997) Science 277:942-946; Riddle and Albert (1997) Genetic andEnvironmental Regulation of Dauer Larva Development. In C. elegans II(ed. D. L. Riddle, T. Blumenthal, B. J. Meyer and J. R. Priess), pp.739-768, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.).The TGF-β-like molecule DAF-7 is a probable neuroendocrine signal: it isexpressed in the sensory neuron ASI that represses dauer arrest(Bargmann and Horvitz (1991) Science 251:1243-1246) and its expressionis regulated by dauer-inducing pheromone (Ren et al. (1996) Science274:1389-1392; Schackwitz et al. (1996) Neuron 17:719-728). While theinsulin-like ligand for the DAF-2 insulin-like receptor has not yet beenidentified, it may also be produced by secretory neurons and regulatedby pheromone. Precedent from biochemical analysis predicts that DAF-2,AGE-1, AKT-1/AKT-2, and DAF-16 function in the same cells. It is not yetclear whether the DAF-2 signaling pathway acts in the target tissuesthat are remodeled in dauer larvae such as the pharynx, hypodermis, andintestine, or in other signaling cells that in turn control targettissues. The broad expression pattern of akt-1 and akt-2 includes thenervous system, pharynx, and hypodermis. This expression pattern isconsistent with a role for these genes either in sensory neurons thatsignal to repress dauer arrest or in the target tissues that receive thedauer repressing signal. The expression patterns of daf-2 and age-1 havenot been reported; daf-16 is widely expressed (Ogg et al. (1997) Nature389:994-999) as are daf-3 and daf-4, two genes that comprise the DAF-7TGF-β signal reception pathway (Patterson et al. (1997) Genes andDevelopment 11:2679-2690). Mosaic or tissue-specific expression analysiswill be required to demonstrate in which cell types the DAF-2insulin-like and DAF-1/DAF-4 TGF-β signal transduction pathways act.

[0253] The role of AKT-1 and AKT-2 in regulating the metabolic shift anddevelopmental arrest associated with dauer formation suggests thefollowing model. Under normal growth conditions, an insulin-likemolecule binds to the DAF-2 insulin receptor kinase inducingautophosphorylation and recruitment of AGE-1 PI3K. As discussed herein,PI3K signals via Akt/PKB. Precedent from biochemical experiments inother systems (Franke et al., Cell 81:727-736, 1995; Franke et al.,Science 275:665-668, 1997; Klippel et al., Mol. Cell Biol. 17:338-344,1997) suggests that AGE-1 activation produces phospholipids that bind toand activate AKT-1 and AKT-2 by inducing a conformational change in theprotein that makes it accessible to phosphorylation events which arenecessary for activation (Alessi et al., Current Biology 7:261-269,1997; Stokoe et al., Science 277:567-570, 1997). A parallel pathway orpathways from the DAF-2 insulin receptor-like protein is also activated.The AKT-1 and AKT-2 kinases, as well as molecules from the parallelpathway, negatively regulate DAF-16 activity, possibly viaphosphorylation. Phosphorylated DAF-16 could be inactive, function toactivate genes required for reproductive growth and metabolism, orrepress genes required for dauer arrest and energy storage. Othersignaling molecules that are activated by DAF-2 must also convergedownstream of AGE-1 (for example, on DAF-16 or AKT-1/AKT-2) for properregulation of metabolism and lifespan: the dauer arrest induced by lossof AGE-1 PI3K or AKT-1/AKT-1 activity implies that the loss of only oneof these inputs to DAF-16 is sufficient to cause dauer arrest. Underdauer inducing conditions, DAF-2, AGE-1, AKT-1/AKT-2, and othersignaling pathways from DAF-2 are inactive and therefore DAF-16 isactive, presumably because it is under-phosphorylated. Active DAF-16either represses genes required for reproductive growth and metabolismor activates genes necessary for dauer arrest and energy storage.

[0254] The DAF-16 Fork head protein has been suggested to interact withthe DAF-3, DAF-8, or DAF-14 Smad proteins to integrate converging TGF-βlike neuroendocrine signals with insulin-like signals (Ogg et al.,Nature 389:994-999, 1997; Patterson et al., Genes & Development11:2679-2690, 1997). DAF-16 may form a complex with the DAF-3 Smadprotein under dauer inducing conditions to regulate these downstreamgenes (Ogg et al., Nature 389:994-999, 1997), while AKT-1phosphorylation of DAF-16 may inhibit the formation of a Smad/Fork headcomplex during reproductive development.

[0255] Akt/PKB has been implicated in mammalian insulin receptorsignaling that localizes glucose transporters to the plasma membrane(Kohn et al. (1996) J. Biol. Chem. 271:31372-31378) and has been shownto regulate glycogen synthesis via direct phosphorylation of GSK3 (Crosset al. (1995) Nature 378:785-789); two events that are nottranscriptionally regulated. While there also may be such Akt/PKBoutputs in C. elegans, the DAF-16 Fork head transcription factorrepresents the major output of DAF-2/AGE-I/AKT-l/AKT-2 insulinreceptor-like signaling (Ogg et al. (1997) Nature 389:994-999).Similarly Akt/PKB action in the insulin/IGF-I anti-apoptotic pathway(Dudek et al. (1997) Science 275:661-665; Kauffinann-Zeh et al. (1997)Nature 385:544-548; Kulik et al. (1997) Mol. Cell Biol. 17:1595-1606)may also converge on transcription factors related to DAF-16.

[0256] The present model, based on genetic evidence that Akt/PKB couplesinsulin receptor-like signaling to transcriptional output via the DAF-16Fork head transcription factor in C. elegans, predicts that Akt/PKB willhave transcriptional outputs in insulin-like signaling across phylogeny.It was previously suggested that the human homologs of the DAF-16transcription factor (AFX, FKHR, FKHRL1 and AF6q21) may be the pertinentdownsteam effectors of insulin signaling in humans (Ogg et al., Nature389:994-999, 1997). Two of the consensus Akt/PKB sites conserved inDAF-16 and its human homologs are located outside of the Fork head DNAbinding domain, and two sites are located in the highly basic W2 regionof the Fork head domain that has been shown to mediate DNA phosphatebackbone contacts (Clark et al. (1993) Nature 364:412-420). Insulinstimulated Akt/PKB phosphorylation of the W2 sites may affect DNAbinding whereas the other conserved sites may affect transactivation. Arecent report shows that Akt/PKB mediates insulin dependent repressionof the insulin-like growth factor binding protein-I (IGFBP-1) gene inHepG2 cells via a conserved insulin response sequence (CAAAAC/TAA)(Cichy et al., J. Biol. Chem. 273:6482-6487, 1998). Interestingly, wehave determined that DAF-16 binds to this same insulin response sequencein vitro. We propose that Akt/PKB mediates its transcriptional effectson insulin responsive genes such as IGFBP-1 via the human homologs ofDAF-16: AFX, FKHR, FKHRL1, or AF6q21.

[0257] In addition, genetic analysis suggests that drugs that activateAKT or PDK can bypass the need for AGE-1 PI3K signaling, and mapping ofmutations to particular regions of AKT-1 and PDK-1 points out targetsfor activation of these enzymes. Thus, drugs that activate these kinasesare expected to partially relieve defects in insulin signaling, forexample, associated with type II diabetes. The genetic analysisdescribed herein also suggests that another unknown output of DAF-2insulin like signaling exists. That output may be identified using AKTgain of function mutations to activate the AGE-1 PI3K pathway andscreening for mutations that allow daf-2 receptor mutations to growreproductively. Alternatively, the genes in this parallel pathway may beidentified by screening age-1 ;daf-18 mutants for arrest at the dauerstage.

[0258] PDK Genetics

[0259] From the same genetic screen that generated the akt-1(mg144gf)allele, we identified another age-1 suppressor, mg142. This mutationalso bypasses the need for upstream age-1 signaling and is geneticallydominant. Genetic mapping placed the mutation in the region where a C.elegans homologue maps. The genomic sequence of pdk-1, starting 60 bpupstream of the start codon and ending 60 bp downstream of the stopcodon is shown in FIG. 35 (SEQ ID NO: 158). FIGS. 36 and 37 show the twoC. elegans pdk-1 spliced forms, pdk-1a (FIG. 36; SEQ ID NO: 159) andpdk-1b (FIG. 37; SEQ ID NO: 160). The pdk-1(mg142) gain of functionmutation is Ala303Val (splice 1). This protein is 58% identical tomammalian PDK in the plecstrin homology domain and 39% identical in thekinase domain as shown below (SEQ ID NOS: 170-199). Score = 252 (88.7bits), Expect = 2.2e−60, Sum P (6) = 2.2e−60 Identities = 47/80 (58%),Positives = 60/80 (75%), Frame = +3 Query: 439LEKQAGGNPWHQFVENNLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEI 498LE+Q   NP+H F  N+LILK G ++K++GLFARRR  LLTEGPHL Y+D  N VLKGE+ Sbjct: 1818LEEQRVKNPFHIFTNNSLILKQGYLEKKRGLFARRRMFLLTEGPHLLYIDVPNLVLKGEV 1997 Query:499 PWSQELRPEAKNFKTFFVHT  518 PW+  ++ E KN  TFF+HT Sbjct: 1998PWTPCMQVELKNSGTFFIHT  2057 Score = 201 (70.8 bits), Expect = 2.2e−60,Sum P (6) = 2.2e−60 Identities = 48/123 (39%), Positives = 72/123 (58%),Frame = +1 Query: 263SDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 322+D+W LGCI++Q +AG PPFRA N+Y + ++I +L++ FPE F  +A +++ K+LV Sbjct: 802TDIWGLGCILFQCLAGQPPFRAVNQYHLLKRIQELDFSFPEGFPEEASEIIAKILV-G*H 978 Query:323 KRLGCE----EMEGYGP--------LKAHPFFESVTWENLHQQTPPKLTAYLPAMSEDDE 370+ L  E     ++   P        L AH FFE+V W N+    PP L AY+PA   + E Sbjct: 979ETLKTEYVIFNLQVRDPSTRITSQELMAHKFFENVDWVNIANIKPPVLHAYIPATFGEPE 1158 Query:371 DCYGN  375   Y N Sbjct: 1159 -YYSN  1170 Score = 180 (63.4 bits),Expect = 2.2e−60, Sum P(6) = 2.2e−60 Identities = 31/72 (43%), Positives= 52/72 (72%), Frame = +2 Query: 157FGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED 216F +   +NG+L + +   GSFD   ++F+ +EI++ L++LH   I+HRD+KP+N+L+ +D Sbjct: 287FVIGLVENGDLGESLCHFGSFDMLTSKFFASEILTGLQFLHDNKIVHRDMKPDNVLIQKD 466 Query:217 MHIQITDFGTAK  228  HI ITDFG+A+ Sbjct: 467 GHILITDFGSAQ  502 Score= 83 (29.2 bits), Expect = 2.2e−60, Sum P(6) = 2.2e−60 Identities= 15/53 (28%), Positives = 32/53 (60%), Frame = +2 Query: 108YAIKILEKRHIIKENKVPYVTRERDVMSRLD-----HPFFVKLYFTFQDDEKL 155+A+K+L+K ++ +  K+  + RE+++++ L      HPF  +LY  F D  ++ Sbjct: 8FAVKVLQKSYLNRHQKMDAIIREKNILTYLSQECGGHPFVTQLYTHFHDQARI 166 Score = 81(28.5 bits), Expect = 2.2e−60, Sum P (6) = 2.2e−60 Identities = 15/29(51%), Positives = 19/29 (65%), Frame = +2 Query: 519PNRTYYLMDPSGNAHKWCRKIQEVWRQRY 547 PNR YYL D    A +WC+ I +V R+RY Sbjct:2129 PNRVYYLFDLEKKADEWCKAINDV-RKRY 2212 Score = 78 (27.5 bits), Expect= 2.2e−60, Sum P(6) = 2.2e−60 Identities = 15/25 (60%), Positives= 18/25 (72%), Frame = +3 Query: 232 PESKQARANSFVGTAQYVSPELLTE 256PE   AR  +FVGTA YVSPE+L + Sbjct: 660 PEENTARRTTFVGTALYVSPEMLAD 734

[0260] Overall, C. elegans pdk-1 exhibits the following homology tohuman PDK-1. Score = 118 (54.4 bits), Expect = 1.4e−104, Sun F (S)= 1.4e−104 Identities = 21/62 (33%), Positives = 41/62 (66%) Query: 63KRTSNDFMFLQSMGEGAYSQVFRCREVATDAMFAVKVLQKSYLNRHQKMDAIIREKNILT 122K+   DF F + +GEG++S V   RE+AT   +A+K+L+K ++ +  K+  + RE+++++ Sbjct: 76KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 135 Query:123 YL  124  L Sbjct: 136 EL  137 Score = 230 (106.0 bits), Expect= 1.4e−104, Sun F (S) = 1.4e−104 Identities = 39/90 (43%), Positives= 63/90 (70%) Query: 131HFFVTQLYTHFHDQARIYFVIGLVENGDLGESLCHFGSFDMLTSKFFASEILTGLQFLHD 190HPF  +LY  F D  ++YF +   +NG+L + +   GSFD   ++F+ +EI++ L++LH Sbjct: 139HPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHG 198 Query:191 NKIVHRDMKPDNVLIQKDGHILITDFGSAQ  220   I+HRD+KP+N+L+ +D HI ITDFG+A+Sbjct: 199 KGTTHRDLKPENILLNEDMHIQITDFGTAK  228 Score = 238 (109.7 bits),Expect = 1.4e−104, Sum F (S) = 1.4e−104 Identities = 43/98 (43%),Positives = 67/98 (68%) Query: 259EENTARRTTFVGTALYVSPEMLADGDVGPQTDIWGLGCILFQCLAGQPPFRAVNQYHLLK 318E   AR  +FVGTA YVSPE+L +      +D+W LGCI++Q +AG PPFRA N+Y + + Sbjct: 233ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQ 292 Query:319 RIQELDFSFPEGFPEEASEIIAKILVRDPSTRITSQEL  356+I +L++ FPE F  +A +++ K+LV D + R+  +E+ Sbjct: 293KTTKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEM  330 Score = 85 (39.2 bits),Expect = 1.4e−104, Sun F (S) = 1.4e−104 Identities = 17/35 (48%),Positives = 21/35 (60%) Query: 356 LMAHKFFENVDWVNIANIKPPVLHAYIPATFGEPE390 L AH FFE+V W N+    PP L AY+PA   + E Sbjct: 336LKAHPFFESVTWENLHQQTPPKLTAYLPAMSEDDE 370 Score = 324 (149.3 bits), Expect= 1.4e−104, Sum P (5) = 1.4e−104 Identities = 59/104 (56%), Positives= 75/104 (72%) Query: 458LEEQRVKNPFHIFTNNSLILKQGYLEKKRGLFARRRMFLLTEGPELLYIDVPNLVLKGEV 517LE+Q   NP+H F  N+LILK G ++K++GLFARRR  LLTEGPHL Y+D  N VLKGE+ Sbjct: 439LEKQAGGNPWHQFVENNLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEI 498 Query:518 PWTPCMQVELKNSGTFFIETPNRVYYLFDLEKKADEWCKAINDV  561PW+  ++ E KN  TFF+HTPNR YYL D    A +WC+ I +V Sbjct: 499PWSQELRPEAKNFKTFFVHTPNRTYYLMDPSGNAHKWCRKIQEV  542

[0261] Mapping of the mg142 mutation to this open reading frameestablishes the function of this protein. It is much more closelyrelated to PDK than to any other known kinase. PDK is a mammalian kinasethat phosphorylates an essential serine residue on AKT, contributing toits activation. The region of akt-1 phosphorylated by PDK-1 is shownbelow (SEQ ID NO: 202-207). human AKT 276KLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAREV 320KLENL+LDKDGHIKI DFGLCKE I G     TFCGTPEYLAFEV Ce akt-1 33509KLENLLLDKDGHIKIADFCLCKEEISFCDKTSTFCGTPEYLAPEV 33643 Ceakt2 326LCKEEIKYGDKTSTFCGTPEYLAFEVIEDIDYDRSVDWWGVGVVMYEMMCGRLPFSAKENGKLCKE I G     TFCGTPEYLAPEV+ED DYR+VDWWG+GVVMYEMMCGRLPF  +++ + moAKT: 298LCKEGISDGATMKTFCGTPEYLAPEVLEDNDYCRAVDWWGLGVVMYEMMCGRLPFYNQDHER

[0262] The phosphorylated serine is conserved in akt-1 and akt-2. Thus,PDK is an excellent candidate gene for the mg142 mutation. The geneticregion bearing pdk-1 was amplified from the mg142 strain, and an aminoacid substitution in a conserved region of the PDK kinase domain wasdetected. While a gain of function mutation in pdk would be consistentwith the biochemical work that shows that PDK acts upstream of AKT toactivate it, this genetic work suggests that, if PDK can be activated(for example, by the mg142 mutation), no PIP3 signaling from the AGE-1PI3K is necessary, since mg142 suppresses an age-1 null allele. Toestablish that this substitution causes the suppression of age-1 induceddauer arrest, a strategy analogous to that used to analyze theakt-1(mg144gf) mutation may be utilized.

[0263] Because we have implicated PDK in the C. elegans insulinsignaling pathway, human PDK1 becomes a candidate gene for variation indiabetes. Mutations in human PDK1 may underlie the genetic variationthat causes diabetes in some families. Similarly, drugs that activatePDK, like the mg142 mutation that activates C. elegans pdk-1, may bypassthe need for upstream signaling in some diabetics with such upstreamdefects. The region of human PDK1 that is homologous to the C. eleganspdk-1 at alanine 303 provides a good candidate for screening for drugsthat bind and activate signaling. Similarly, the region of human AKTbetween the kinase domain and the PH domain, where the C. elegans akt-1gain of function mutation maps is a good candidate for the design ofdrugs that activate AKT. Exemplary screens identify daf-2 receptormutations that are capable of reproductive growth or age-1 ;daf-18mutants that arrest at dauer stage. Such activated AKT in C. elegansbypasses the need for upstream signaling from the AGE-1 PI3K and maysimilarly treat diabetics with defects in insulin signaling betweeninsulin and AKT.

[0264] In addition, another mutation, pdk-1(lof), has been identified asa Gly to Arg substitution at position 295. This mutation causes dauerarrest in an otherwise wild-type background. This and the mg142 mutationare located near the psuedosubstrate binding region of PDK-1, based onthe crystal structure of PKA. It is likely that the G to R mutationdisallows recognition of the substrate AKT-1 and AKT-2, whereas the A toV gain of function mutation may disallow recognition of apsuedosubstrate site on PDK but allow recognition of the substrate,AKT-1 and AKT-2.

[0265] Our gain of function mutations in PDK-1 and AKT-1 point tonegative regulatory domains of these proteins. For example, the regionflanking the akt-1(mg 144) mutation in the nonconserved domain of akt-1may mediate blocking of the kinase activity, so that when this region ismutant, the kinase is more active. Similarly the region flanking thepdk-1(mg142) mutations in the conserved kinase domain may promiscouslyactivate pdk-1. This region is conserved in human pdk-1 and may exposethe kinase domain to the substrates, AKT-1 and AKT-2, constitutively.Chemicals that target the homologous or analogous domains in the humanhomologues of AKT-1, AKT-2, and PDK-1 may activate these kinases,bypassing the need for upstream insulin input and ameliorating theglucose intolerance.

[0266] Function of the Insulin-Like Pathway in Neurons

[0267] In addition to the above results, we have also found that thedauer arrest and aging effects of defects in age-1 signaling can becomplemented by expression of this gene in the nervous system only. Weused the nervous system-specific promoter unc-14 to drive expression ofan age-1 cDNA. The age-1 fusion genes were placed in an age-1 nullmutant, mg44, which arrests at the dauer stage 100% of the time andshifts to fat storage metabolism if no maternal or zygotic age-1 issupplied. Expression of age-1 in just the nervous system in this mutantcompletely complemented the dauer arrest and long lifespan phenotypesand partially complemented the metabolic fat storage defect. Theexpression of age-1 from a ubiquitous promoter, dpy-30, rescued all ofthe defects of an age-1 mg44 null mutant. In parallel experiments, twodifferent nervous system promoters, unc-14 and unc-119, were used todrive expression of daf-2 cDNA in daf-2 mutant animals. However,neuronal expression of DAF-2 did not rescue the aging or metabolicphenotypes of the daf-2 mutants. Given the multiple insulin-like ligandsfor DAF-2, these results may indicate that there is differentialsplicing of this receptor so that the cDNA introduced in theseexperiments supplied only one functional isoform. On the other hand,age-1 rescues all phenotypes when expressed ubiquitously, arguingagainst a differential splicing mechanism.

[0268] These data indicate that the insulin signaling pathway canregulate dauer arrest from the nervous system and may also regulateaging from the nervous system. The data also show that this pathway mayfunction as well in target tissues to regulate metabolism. It is likelythat the same situation may be true of mammalian insulin like signaling:the effects of insulin on aging may be in the nervous system whereastheir well known effects on muscle and adipocyte metabolism may be akinto the DAF-2/AGE-1 regulation of metabolism from non-neuronal foci ofaction.

[0269] Diapause and Longevity

[0270] Weak daf-2 and age-1 mutants that do not arrest at the dauerstage nevertheless live much longer than wild-type (Larsen et al.,Genetics 139:

[0271]1567-1583, 1995; Kenyon et al., Nature 366: 461-464, 1993; Dormanet al., Genetics 141: 1399-1406, 1995). This connection betweenlongevity and diapause control may not be unique to C. elegans. Diapausearrest is an essential feature of many vertebrate and invertebrate lifecycles, especially in regions with seasonal temperature and humidityextremes (Tauber et al., Seasonal Adaptation of Insects, OxfordUniversity Press, New York, N.Y., 1986). Animals in diapause arrest slowtheir metabolism and their rates of aging, and can survive for periodsfor much longer than their reproductive lifespan (Tauber et al., supra,1986).

[0272] Because insulin-like DAF-2/AGE-1 signaling mediates C. elegansdiapause longevity control, the mammalian insulin signaling pathway mayalso control longevity homologously. In fact, the increase in longevityassociated with decreased DAF-2 signaling is analogous to mammalianlongevity increases associated with caloric restriction (Finch,Longevity, Senescence and the Genome, The University of Chicago Press,Chicago, 1990). It is possible that caloric restriction causes a declinein insulin signaling to induce a partial diapause state, like thatinduced in weak daf-2 and age-1 mutants. The induction of diapause-likestates may affect post-reproductive longevity (Finch, supra), as in C.elegans. Alternatively, it is the changes in the mode and tempo ofmetabolism itself rather than diapause per se that causes increasedlongevity. Another long-lived C. elegans mutant, clk-1, may alsoregulate lifespan via such metabolic effects (Ewbank et al., Science275: 980-983, 1997). This association of metabolic rate with longevityis also consistent with the correlation of free radical generation toaging (Finch, supra).

[0273] Daf-18 Suppresses the Metabolic and Dauer Phenotypes of Age-1 andDaf-2

[0274] In addition to the genes described above, we have also discoveredthat daf-18 functions in the insulin signaling cascade as follows. age-1null mutant progeny of heterozygote mothers are maternally rescued forarrest at the dauer diapause stage (Gottlieb and Ruvkun (1994) Genetics137:107-120), but not for accumulation of fat (FIG. 38D) or increasedlongevity (Gottlieb and Ruvkun (1994) Genetics 137:107-120). The progenyof these fat and long lived age-1 homozygous animals, which receive nomaternal or zygotic AGE-1 PI3K activity, arrest development as dauerlarvae (Morris et al. (1996) Nature 382:536-539) (Tables VII and VIII).TABLE VII Suppression of daf-18 by inhibition of akt-1 and akt-2 geneactivity Phenotype of Progeny at 25° C. (%) dsRNA L4 and Strain injectedAdult Dauer Other N Wild type (Bristol uninjected 99.8 0 0.2 1040 N2)Wild type (Bristol akt-1 & akt-2 13.7 85.9 0.3 2199 N2) daf-18(e1375)uninjected 99.1 0 0.9 1213 daf-18(e1375) akt-1 & akt-2 23.2 76.6 0.21455 daf-16(mgDf50) uninjected 99.9 0 0.1 1266 daf-16(mgDf50) akt-1 &akt-2 97.5 0 2.5 1970 age-1(mg44) uninjected 0 99.5 0.4 228 age-1(mg44)akt-1 & akt-2 0 94.2 5.8 277 age-1(mg44); daf-18 uninjected 99.3 0.7 0274 (e1375) age-1(mg44); daf-18 akt-1 & akt-2 14.4 85.0 0.7 592 (e1375)daf-16(mgDf50); uninjected 100 0 0 465 age-1 (mg44) daf-16(mgDf50);akt-1 & akt-2 96.2 0 3.8 1098 age-1 (mg44) daf-2(e1370) uninjected 099.1 0.9 109 daf-2(e1370) akt-1 & akt-2 0 100 0 176 daf-2(e1370);uninjected 2.2 97.8 0 225 daf 18(e1375) daf-2(e1370); akt-1 & akt-2 099.9 0.1 682 daf 18(e1375) daf-16(mgDf50); uninjected 100 0 0 487daf-2(e1370) daf-16(mgDf50); akt-1 & akt-2 99.1 0 0.9 780 daf-2(e1370)

[0275] TABLE VIII Suppression of age-1 and daf-2 by inhibition of daf-18gene activity Phenotype of Progeny at 23° C. (%) dsRNA L4 and Straininjected Adult Dauer Other N Wild type (Bristol N2) uninjected 100 0 0763 Wild type (Bristol N2) daf-18 99.4 0 0.6 1305 age-1(m333) uninjected0 100 0 434 age-1(m344) daf-18 94.2 5.6 0.3 771 age-1(mg109) uninjected0 99.4 0.6 172 age-1(mg109) daf-18 94.7 0.3 5.0 341 age-1(mg44)uninjected 0 97.9 2.1 389 age-1(mg44) daf-18 90.7 7.1 2.1 701age-1(mg44); daf-18 uninjected 99.8 0 0.2 569 (e1375) daf-2(e1370)uninjected 0 100 0 606 daf-2(e1370) daf-18 57.7 39.8 2.5 1266daf-2(e1370); daf-18 uninjected 6.3 93.7 0 317 (e1375)

[0276] Dauer larvae accumulate large amounts of fat (FIG. 38E) and livemuch longer than reproductively growing animals (Klass and Hirsh (1976)Nature 260:523-525). The dauer arrest (Gottlieb and Ruvkun (1994)Genetics 137:107-120; Larsen et al. (1995) Genetics 139:1567-1583;Tables VII and VIII), fat accumulation (FIG. 38F) and longevityphenotypes (Larsen et al. (1995) Genetics 139:1567-1583) of age-1 nullmutations are suppressed by daf-18(e1375). daf-18(e1375) gene activitydoes not appear to interfere with normal age-1 signaling and growthbecause daf-18(e1375) mutant animals in a wild type age-1 backgroundaccumulate wild type amounts of fat (FIG. 38B).

[0277] Although daf-18(e1375) behaves as a semi-dominant suppressor ofage-1, it phenocopies inactivation of daf-18(+) gene activity by RNAinterference (RNAi) (see below). This suggests that daf-18(e1375) is aloss-of-function allele that is either haploinsufficient or dominantlyantimorphic. The bypass of the normal requirement for AGE-1 PI3Ksignaling by daf-18(e1375) suggests that either lack of AGE-1 activitycauses increased daf-18 activity or that decreased daf-18 activityincreases PIP3 signals in an AGE-1-independent manner.

[0278] Although daf-18(e1375) readily suppresses age-1 mutations for themetabolic, dauer, and longevity phenotypes, daf-18(e1375) is a lesseffective suppressor of daf-2 insulin receptor-like mutations (Dorman etal. (1995) Genetics 141:1399-1406; Larsen et al. (1995) Genetics139:1567-1583 and Tables VII and V1II). This is similar to thegain-of-function akt-1(mg144) which can suppress age-1 null mutants, butnot daf-2 mutants (Paradis and Ruvkun (1998) Genes Dev. 12:2488-2498).Like the increase in akt-1 gene activity induced by akt-1(mg144), thedecrease in daf-18 gene activity caused by daf-18(e1375) can bypass thenormal requirement for AGE-1 PI3K signaling, but not for DAF-2 insulinreceptor-like signaling (Tables VII and VIII). As in the case ofbiochemically studied receptor tyrosine kinases, the DAF-2 receptor mayhave multiple parallel outputs, with AGE-1, AKT-1/AKT-2, and DAF-18acting in one of these pathways. Signals from DAF-2 converge at theDAF-16 Fork head transcription factor, because null mutations in daf-16suppress all known phenotypes of daf-2 and age-1 null mutations (Ogg etal. (1997) Nature 389:994-999; Tables VII and VIII).

[0279] Daf-18 Functions Upstream of Akt-1 and Akt-2

[0280] In contrast to the action of DAF-2 and AGE-1, AKT-1 and AKT-2 actdownstream of DAF-18. akt-1 and akt-2 function redundantly in theregulation of dauer arrest. Inhibition of both gene activities in wildtype animals by RNAi causes constitutive dauer arrest, whereasinhibition of either akt-1 or akt-2 alone does not (Paradis and Ruvkun(1998) Genes Dev. 12:2488-2498). Inhibition of akt-1 and akt-2 by RNAicauses dauer arrest in either daf-18 or wild type animals (77% and 86%,respectively, Table VII). In contrast, 0% of daf-16(mgDf5O) animalsarrest as dauers when akt-1 and akt-2 are inhibited (Paradis and Ruvkun(1998) Genes Dev. 12:2488-2498 and Table VII). Thus mutations in daf-18do not bypass the normal requirement for akt-1 and akt-2 activity. Thesedata suggest that daf-18 functions upstream or parallel to akt-1 andakt-2.

[0281] The suppression of age-1 null mutations by daf-18(e1375) is alsodependent upon akt-1 and akt-2. No progeny of age-1(mg44) null mutanthomozygous animals develop to become fertile adults (99% dauer larvae,Table VII). In contrast, few age-1(mg44); daf-18(e1375) animals arrestas dauers (0.7% dauer larvae, Table VII), instead of developing intoreproductive adults. However, when akt-1 and akt-2 are inhibited by RNAiin age-1(mg44); daf-18(e1375), most progeny arrest at the dauer stage(85% dauers, Table VII). The weaker suppression of daf-2 by daf-18 isalso dependent upon akt-1 and akt-2 (Table VII). These data suggest thatthe ability of daf-18 to suppress defects in insulin-like signaling isdependent upon akt-1 and/or akt-2, showing that daf-18 acts downstreamof AGE-1 PI3K, but upstream of AKT-1 and AKT-2 in this signalingcascade.

[0282] Daf-18 Encodes a Homologue of Mammalian PTEN (MMAC1/TEP1)

[0283] Daf-18 maps to a genetic region (Larsen et al. (1995) Genetics139:1567-1583) which bears the probable C. elegans homologue (T07A9.6)of the tumor suppressor gene PTEN (Li and Sun (1997) Cancer Res.57:2124-2129; Li et al. (1997) Science 275:1943-1947; and Steck et al.(1997) Nat. Genet. 15:356-362). Consistent with the role of PTEN as adaf-18 homologue is the fact that PTEN has lipid phosphatase activitythat dephosphorylates position 3 on the inositol ring of PIP₃ in vitroand decreases the levels of the lipid products of PI3K in response toinsulin signaling in human 293 cells (Maehama and Dixon (1998) J. Biol.Chem. 273:13375-13378). Accordingly, a decrease in PTEN activity wouldbe predicted to enhance PI3K signaling, consistent with daf-18 activity.Genetic mapping, the detection of the daf-18(e1375) mutation in thisPTEN homologue, and the similar phenotype to daf-18(e1375) caused byRNAi of this PTEN homologue all demonstrate that daf-18 corresponds tothis gene.

[0284] The sequence of a full length daf-18 cDNA predicts a protein of962 amino acids (FIGS. 40A and 40B). Homology between DAF-18 and humanPTEN (U93051; Li et al. (1997) Science 275:1943-1947) is highest withinthe phosphatase domain (38% identical, 94/250 aa) which is located atthe amino-terminal end of both proteins (FIGS. 39A and 39B). Amino acidssurrounding the probable active site Cys-(X)₅-Arg sequence are 90%identical (18/20 aa) between DAF-18 and PTEN (FIG. 39B). This suggeststhat the substrate specificity of DAF-18 and PTEN may be similar.

[0285] Using the canonical daf-18 PTEN cDNA sequences and genomicsequence from the C. elegans Genome Sequencing Consortium, the codingregion and intron/exon boundaries of daf-18 were sequenced indaf-18(e1375) and compared to the sequence of wild type. A 30 base pairinsertion mutation was detected in daf-18(e1375) (FIG. 39A). Thisinsertion mutation occurs within exon 4 and is predicted to insert 6amino acids to the coding sequence before introducing a stop codon. Theinsertion is composed of a thirteen base pair repeat and two smallerrepeat segments. The mutation is predicted to leave the phosphatasedomain intact, but to truncate the carboxy-terminal half of the protein.Since the mutation maps to an unconserved domain and because inhibitionof daf-18 by RNAi is more severe than daf-18(e1375) (see below), it isunlikely that daf-18(e1375) is a null mutant.

[0286] Although many of the oncogenic human PTEN mutations map to thephosphatase domain, several have been identified in the carboxy-terminalhalf of the protein (see the Human Gene Mutation Database and referencestherein; Krawczak and Cooper (1997) Trends Genet. 13:121-2). Thesecarboxy-terminal mutations are analogous to daf-18(e1375). Since someoncogenic mutations in PTEN and the daf-18(e1375) allele are localizedto the carboxyl-terminal end, these regions, though unconserved betweenC. elegans and mammals, may be critical for phosphatase localization orfunction.

[0287] Daf-18(e1375) is the only identified daf-18 allele, despite theextensive genetic screens that have been done for genes in the dafpathway. Additional daf-18 alleles have not been isolated in screens forsuppressors of daf-2 (in contrast to the scores of daf-16 alleles),which may be due to the weak suppression of daf-2 by daf-18(e1375)(Tables VII and VIII). Because of the strong suppression of age-1 nullmutants by daf-18(e1375), more alleles would be expected from screensfor age-1 suppressor mutations.

[0288] The daf-18(e1375) allele causes other phenotypes besidessuppression of the age-1 null mutant. 8% of daf-18(e1375) animals(n=831) die as adults with a burst vulva compared to 0% of wild type(Bristol N2) adults (n=920) grown at 23° C. This suggests that daf-18may function in other signal transduction pathways. Consistent withthis, a daf-18 promoter::green fluorescent protein fusion is expressedin many tissues throughout the animal.

[0289] Inactivation of Daf-18 by RNAi Suppresses Age-1 and Daf-2

[0290] Inactivation of the C. elegans PTEN homologue T07A9.6 by RNAiconfirms the assignment of daf-18 to the gene and the assignment ofdaf-18 to a function downstream of age-1 PI3K and upstream of akt-1 andakt-2. The inactivation of daf-18 by RNAi potently suppresses nullmutations in age-1 and more weakly suppresses a daf-2 insulinreceptor-like mutant. Whereas the homozygous progeny of three differentage-1 mutant alleles, including two null alleles, arrest at the dauerstage virtually 100% of the time (Dorman et al. (1995) Genetics141:1399-1406; Larsen et al. (1995) Genetics 139:1567-1583 and TableVIII), inhibition of daf-18 by RNAi suppresses the dauer constitutivephenotype of age-1(m333), age-1(mg109) and age-1(mg44) (only 6%, 1% and8% dauers, respectively) (Table VIII). This is comparable to thesuppression of age-1(mg44) by daf-18(e1375) (0% dauers, Table VIII).

[0291] Inhibition of daf-18 PTEN by RNAi partially suppresses aloss-of-function allele of the daf-2 insulin receptor-like gene. Thissuppression is most easily observed under conditions where daf-2 geneactivity is decreased, but probably not missing. daf-2(e1370) is atemperature sensitive allele with a mutation in the kinase domain(Kimura et al. (1997) Science 277:942-946). At a low temperature (15°C.), daf-2(e1370) animals do not form dauers, but more restrictivetemperatures (25° C. or 23° C.) cause 100% arrest at the dauer stage(Tables VII and VIII). The arrest of daf-2(e1370) at 23° C. is weaklysuppressed by daf-18(e1375) (94% dauers), but inhibition of daf-18(+) byRNAi suppresses daf-2(e1370) much more potently (40% dauers) (TableVIII). At 25° C., daf-18(e1375) is a weaker daf-2 suppressor, suggestingthat DAF-2 insulin receptor-like outputs, parallel to the AGE-1 PI3K,DAF-18 PTEN, and AKT-½ pathways, are more essential at this highertemperature. In contrast, the daf-16(mgDf50) null mutation completelysuppresses daf-2(e1370) at all temperatures (0% dauers, Tables VII andVIII). This suggests that divergent signals from DAF-2(AGE-1/DAF-18/AKT-½ and another putative pathway) converge upon DAF-16.

[0292] These results suggest that daf-18(e1375) is a partialloss-of-function mutation and that inhibition of daf-18 by RNAi causes alarger decrease in daf-18 gene activity. Similar to daf-18(e1375), theinhibition of daf-18 gene activity in wild type causes some animals toburst at the vulva, but no other obvious phenotypes. The inhibition ofdaf-18 gene activity by RNAi, however, does not necessarily reveal thephenotype induced by the complete loss of daf-18 gene activity.

[0293] Assignment of Daf-18 to the DAF-2 Signaling Pathway

[0294] Our assignment of the daf-18 molecular function to a homologue ofthe PTEN lipid phosphatase fits into our genetic analysis of its actionin the DAF-2 insulin receptor-like signaling pathway. The geneticpathway analysis shows that DAF-18 is likely to act between the AGE-1PI3K and AKT-1/AKT-2. Because PTEN has been shown to dephosphorylateposition 3 of the inositol ring of PIP3, DAF-18 may modulate DAF-2signals by decreasing the PIP3 output of AGE-1 PI3K. DAF-18 may normallydecrease the level of PIP3 signals, perhaps insulating signals emanatingfrom the DAF-2/AGE-1 signaling complex from other PIP3 signals in thecell, or resolving insulin-like signaling episodes by restoring lipidlevels to pre-insulin status. Perhaps the long carboxyl-terminal tailregion of DAF-18 PTEN mediates its localization to insulin signalingcomplexes, insulating them from other signaling complexes, or viceversa. Loss of DAF-18 would be expected to enhance PIP3 signaling to theAkt kinases by allowing the second messenger to promiscuously signalbetween receptor complexes.

[0295] It is not clear from the genetic analysis whether DAF-18/PTENactivity is regulated during insulin-like or other signaling. Forexample, there may be phosphorylation input to activate or inactivateDAF-18 activity. One attractive possibility is that DAF-18 becomesactivated by Akt or PDK1 as a component in the recovery from an episodeof insulin signaling. It may be significant that PTEN lipid phosphataseactivity in vitro is low (Maehama and Dixon (1998) J. Biol. Chem.273:13375-13378), perhaps due to a missing modification by the insulinsignaling cascade.

[0296] DAF-18 may also be regulated by a TGF-β signaling pathway. In C.elegans a TGF-β signaling pathway converges with the DAF-2 insulinreceptor-like signaling pathway (Ogg et al. (1997) Nature 389:994-999)and PTEN expression has been reported to be downregulated by TGF-βsignaling in cell culture (Li and Sun (1997) Cancer Res. 57:2124-2129).The C. elegans DAF-7 TGF-β and insulin-like signaling pathways are alsosynergistic, whereby declines in the TGF-β signals enhance the mutantphenotypes caused by declines in insulin-like signals (Ogg et al. (1997)Nature 389:994-999). If DAF-18 PTEN expression is similarly responsiveto DAF-7 TGF-β inputs, its activity may mediate cross talk between thesepathways in metabolic control.

[0297] The molecular assignment of DAF-18 to the PTEN lipid phosphataserationalizes daf-18 genetic activities in C. elegans metabolic controland longevity. Reduction of daf-18 gene activity causes a decrease infat storage in an age-1 mutant, perhaps because the ensuing activationof AKT-1 and AKT-2 mimics that induced by insulin-like signaling,causing a shift from fat storage metabolism to reproductive, perhapssugar-based, metabolism. The daf-18(e1375) mutation also stronglysuppresses the longevity increase caused by the weak age-1(hx546) PI3Kmutation or the weak daf-2(e1370) insulin receptor-like mutation at asemi-permissive temperature (Dorman et al., (1995) Genetics141:1399-1406; Larsen et al. (1995) Genetics 139:1567-1583), whereasdaf-18(e1375) only weakly suppresses the longevity increase caused bynull age-1 mutations or daf-2(e1370) at the non-permissive temperature(Dorman et al., (1995) Genetics 141:1399-1406; Larsen et al. (1995)Genetics 139:1567-1583). These data show that even though the increasein PIP₃ levels caused by a decrease in daf-18 gene activity can bypassthe need for AGE-1 signaling in dauer arrest, the resulting level ofPIP₃ is not sufficient to induce normal aging. These results arecongruent with aging and dauer arrest phenotypes of an age-1 allelicseries: the highest levels of age-1 (i.e., PIP₃) are necessary fornormal longevity, whereas animals with decreased but non-zero levels ofPIP₃ age more slowly, but do not arrest at the dauer stage. And onlywhen both zygotic and maternal AGE-1 is missing do PIP₃ levels declineto the point that animals arrest at the dauer stage (Gottlieb and Ruvkun(1994) Genetics 137:107-120; and Riddle (1988) The Dauer Larva. In TheNematode Caenorhabditis elegans, W. B. Wood, ed. (Cold Spring Harbor,N.Y.: Cold Spring Harbor Laboratory), pp. 393-412). We have not yetdetermined whether the regulation of metabolism is the cause of thelongevity phenotype (or vice versa) or represents a co-regulated outputof the DAF-2 insulin receptor-like pathway.

[0298] This genetic behavior is similar to that of activated AKT-1,which can suppress the dauer arrest caused by complete lack of AGE-1PI3K signaling, but not the longevity increase (Paradis and Ruvkun(1998) Genes Dev. 12:2488-2498). The suppression of the age-1 nullmutant metabolic phenotypes by daf-18, but not by the akt-1gain-of-function mutation, suggests that an increase in PI(3,4)P₂ andPIP₃ levels is a closer mimic to wild type than activated AKT-1, perhapsbecause both AKT-1 and AKT-2 are activated by increased lipid signalingin a daf-18 mutant. It may also be significant that declines in daf-18activity and the presumed concommitant increase in PI(3,4)P₂ and PIP₃levels in wild type has a negligible effect on longevity (Dorman et al.,(1995) Genetics 141:1399-1406; Larsen et al. (1995) Genetics139:1567-1583). Presumably, once PIP₃ levels are above a threshold,increasing their levels does not influence lifespan.

[0299] Our molecular model suggests that DAF-2, AGE-1, DAF-18, AKT-1,AKT-2, and DAF-16 act in the same cells. It has not addressed whetherthese genes in fact act in the same cells nor have we discerned whetherthis pathway acts in key endocrine signaling cells or in target tissues.daf-18, akt-1, and daf-16 are all expressed in neurons and throughoutmuch of the animal (Ogg et al. (1997) Nature 389:994-999; Paradis andRuvkun (1998) Genes Dev. 12:2488-2498), consistent with their functioneither in signaling cells or target tissues.

[0300] Inhibition of daf-18 can suppress age-1 mutations (m333 and mg44)that are predicted to truncate AGE-1 before the kinase domain andtherefore generate no PIP₃ at all (Morris et al. (1996) Nature382:536-539); Table VIII). The ability of daf-18 inhibition to suppressage-1 null mutations, and our demonstration that daf-18 suppressiondepends on the Akt kinases, suggests that there must be another sourceof PI(3,4)P₂ or PIP₃. This alternative source of lipids is not normallyredundant with those generated by DAF-2/AGE-1 signaling because age-1mutations have metabolism, reproductive growth, and lifespan phenotypes.In the absence of daf-18, lipids may accumulate to levels sufficient toactivate the Akt kinases.

[0301] In addition to AGE-1, there are two other PI3K genes in the C.elegans genome. AGE-1 is the only member of the “Type I” class thatincludes the 110-130 kilodalton catalytic/50-85 or 101 kilodaltonadaptor heterodimers (Vanhaesebroeck et al. (1997) TIBS 22:267-272).Members of this class of PI3Ks are activated by growth factors andheterotrimeric GTP-binding protein-coupled receptors and phosphorylatephosphatidylinositol, PI(4)P, and PI(4,5)P₂ to generate PI(3)P,PIP(3,4)P₂ and PIP₃ in vitro. PIP₃ may be dephosphorylated at the5-position to yield the actual PI(3,4)P₂ signal (Damen et al. (1996)Proc. Natl. Acad. Sci. U.S.A. 93:1689-93; Ono et al. (1996) Nature383:263-6). The “type II” class is represented in C. elegans by F39B1.1.Members of this class are defined by amino terminal extensions and a C2domain at their carboxy termini (Newton (1995) Curr. Biol. 5:973-6;Vanhaesebroeck et al. (1997) TIBS 22:267-272). C2 domains wereoriginally described as Ca²⁺-dependent phospholipid binding motifs, butthey have been found to bind lipid in a Ca²⁺-independent manner and mayalso mediate protein-protein interactions. Type II PI3Ks preferentiallyphosphorylate phosphatidylinositol and PI(4)P, over PI(4,5)P₂, togenerate PI(3)P and PI(3,4)P₂. “Type III” PI3Ks are related to yeastprotein VPS34 (Vanhaesebroeck et al. (1997) TIBS 22:267-272). Theseproteins have regulatory subunits and phosphorylatephosphatidylinositol, exclusively. Rather than being activated bycellular agonists, type III PI3Ks are thought to participate in vesiclesorting (De Camilli et al. (1996) Science 271:1533-9). The C. elegansgene, B0025.1, is most closely related to this family.

[0302] Since AGE-1 is the only known C. elegans type I PI3K, the type IIPI3K, F39B1.1, may be the alternative source of 3-phosphorylatedphosphoinositides which can activate Akt. DAF-18 may normally insulateDAF-2/AGE-1 signaling from other PI(3,4)P₂ or PIP₃ second messengersignals in the cell. But when DAF-18 activity is inhibited, cross talkfrom this other PI3K may promiscuously activate the Akt kinases whichare normally dependent on AGE-1 PI3K generated PIP3.

[0303] Our placement of DAF-18/PTEN downstream from AGE-1 PI3K andupstream from AKT-1 and AKT-2 suggests that mammalian PTEN may alsoregulate Akt activity by modulating PI3K signals. In fact, recentexperiments with PTEN knockout mutant mice have shown that PTEN actsupstream of Akt in mammalian growth factor signaling pathways (Stambolicet al. (1998) Cell 95:29-39). More specifically, the action of DAF-18PTEN in the C. elegans insulin signaling metabolic and longevity controlpathway suggests that mammalian PTEN may modulate insulin control ofmetabolism and lifespan. Reduction in PTEN activity would be expected topotentiate insulin and/or insulin-like growth factor signaling, but anincrease of PTEN activity would be expected to cause insulin resistancedownstream of the insulin receptor, the type observed in late onsetdiabetes. Thus PTEN on chromosome 10 is a candiate gene for humanautosomal dominant type II diabetes as well as for human longevitycontrol.

[0304] Methods

[0305] The experiments described above were carried out using thefollowing materials and methods.

[0306] Strains

[0307] Alleles used were as follows: LGI daf-16(mgDf50); LG IIsqt-1(sc13) age-1(mg44)/mnCl, unc-4(e120) age-1(m333)/mnCl, unc-4(e120)age-1(mg109)/mnCl; LGIII daf-2(e1370).

[0308] Sudan Black Staining

[0309] Larvae and young adults maintained in well fed conditions werewashed in M9 buffer (Brenner (1974) Genetics 77:71-94) for 30 minutes,fixed in M9 with 1% paraformaldehyde, and subjected to three freezethaws. Animals were then washed and dehydrated through washes with 25%,50% and 70% ethanol. Staining was performed overnight in a 50% saturatedsolution of Sudan Black B in 70% EtOH. Stained animals were visualizedwith a Zeiss Axioplan microscope.

[0310] RNA Interference (RNAi) and Dauer Arrest Assays

[0311] akt-1 and akt-2 RNAi was performed as described (Paradis andRuvkun (1998) Genes Dev. 12:2488-2498). daf-18 RNAi was performed in asimilar manner. The full length daf-18 cDNA was amplified by PCR fromyk400b8 (Y. Kohara) using primers CM024 and CM025 (Paradis and Ruvkun(1998) Genes Dev. 12:2488-2498). RNA was transcribed using MEGAscript T3and T7 kit (Ambion) and then single stranded RNA was combined prior toinjection. L4 hermaphrodites or young adults were injected into the gutwith approximately 5 μg/μl double stranded RNA and then were allowed torecover overnight at the experimental temperature. To assay dauerarrest, single injected animals or uninjected L4 hermaphrodites or youngadults were moved to new plates and again on the next two subsequentdays. All progeny laid after the recovery period were scored two daysafter being laid as dead eggs, dauer larvae, L4 larvae, adults oranimals with aberrant development. “Dauers” included dauers and partialdauers as defined (Paradis and Ruvkun (1998) Genes Dev. 12:2488-2498).For the experiments with age-1 mutants, age-1 homozygous mutant progenyof age-1 heterozygous mothers were injected.

[0312] Sequencing

[0313] Genomic DNAs from daf-18(e1375) and wild type (Bristol N2) werePCR amplified and directly sequenced. A putative full length clone,yk400b8 (gift from Y. Kohara), was fully sequenced. The sequence of thisclone and additional clones partially sequenced by Y. Kohara (yk423e3,yk400b8, yk419d6, yk282b4, yk226d6, yk219b10, yk200a11, yk181h9, yk49a4,and yk43e5) have a different exon/intron structure than was predictedfor T07A9.6 by Genefinder.

[0314] Drugs That Regulate DAF-18 PTEN Lipid Phosphatase in theTreatment of Diabetes, Obesity, and Amine

[0315] Since DAF-18/PTEN is a lipid phosphatase, chemical modulation ofits activity may be readily identified using any standard in vitro lipidphosphatase assay (see, for example, Maehama and Dixon, J. Biol. Chem.273:13375, 1998). Chemicals identified by this initial screen may thenbe tested in a C. elegans assay as described herein. These tests arebest done using the human homologue of DAF-18, the oncogene PTEN, bothin vitro and transformed into a C. elegans strain lacking daf-18 geneactivity (also as described herein). In particular, chemicals thatactivate human PTEN in vitro may be tested on C. elegans daf-18 mutantsexpressing human PTEN from the daf-18 promoter, assaying for dauerarrest, metabolic switch from fat storage, and/or increased longevity,either in an otherwise wild type background or in an age-1 or daf-2mutant background. If desired, chemicals that perturb longevity ormetabolism of such humanized C. elegans could also be tested on mice.

[0316] These chemicals would be expected to affect glucose and fatlevels and treat type II diabetes and obesity. In particular, chemicalsthat activate DAF-18 would be expected in increase longevity. Inaddition, even though such chemicals could affect the cell cycle, sincePTEN is a recessive oncogene, skin creams that activate PTEN would beexpected to have youth enhancing activities. Conversely, chemicals thatinhibit DAF-18 activity would be expected to treat type II diabetes andobesity, consistent with the fact that decreases in DAF-18 gene activitycompletely bypass the need for age-1 P13 kinase signaling and partiallybypass the need for daf-2 insulin receptor-like signaling. Thus, drugsthat inhibit human PTEN activity in vitro are preferably tested on C.elegans for the ability to bypass the need for age-1 PI3K signaling inan animal carrying human PTEN expressed from the daf-18 promoter. In oneparticular example, any drug that inhibited human PTEN activity wouldallow an age-1(0); daf-18(0) mutant strain carrying human PTEN expressedfrom the daf-18 promoter to grow reproductively, rather than arrestingin a manner characteristic of the parent strain. Thus, drugs shown toinhibit human PTEN in vitro could be tested on worms of the age-1(0);daf-18(0); daf-18 promoter/PTEN genotype for ability to allowreproductive growth. If desired, such drugs could then be tested fordiabetic therapeutic efficacy in mouse or rat models of obesity onsetdiabetes (as described herein). Drugs identified by this screen wouldtreat some type II diabetic patients as well as some obese patients withdefects in the PI3K outputs of the insulin receptor pathway.

[0317] Glucose Regulation by the C. elegans Insulin Like SignalingPathway: Confirmation of its Applicability to Human Diabetes

[0318] We have constructed a full length protein fusion of GFP to ahighly expressed glucose transporter orthologue in the worm genome:H17B01. The H17B01.1 (GLUT) GFP fusion was amplified with primer CAW59(ccactatggccgagatttcc) and CAW60(ccagtgaaaagttcttctcctttcttcctcttctcgaattcgga). CAW59 is the promoterprimer and corresponds to nucleotides 31101-31120 in cosmid H17B01 and39249-39268 in YAC Y51H7.contig253. Primer CAW60 is the GFP-fusionprimer. The first 23 nucleotides are GFP and the last 21 are GLUT bottomstrand (i.e.cttcctcttctcgaattcggc) corresponding to 48128-48108 inY51H7.contig253 and 5015-5035 in C13F7 (the cosmid that joins H17B01).The protein sequence is as follows (SEQ ID NO: 208):MGVNDHDVSVPLQEVQSRTVEGKLTKCLAFSAFVITLASFQFGYHIGCVNAPGGLITEWIIGSHKDLFDKELSRENADLAWSVAVSVFAVGGMIGGLSSGWLADKVGRRGALFYNNLLALAAAALMGLAKSVGAYPMVILGRLIIGLNCGFSSALVPMFLTEISPNNLRGMIGSLHQLLVTIAILVSQIFGLPHLLGTGDRWPLIFAFTVVPAVLQLALLMLCPESPKYTMAVRGQRNEAESALKKLRDTEDVSTEIEAMQEEATAAGVQEKPKMGDMFKGALLWPMSIAIMMMLAQQLSGINVAMFYSTVIFRGAGLTGNEPFYATIGMGAVNVIMTLIAVWLVDHPKYGRRSLLLAGLTGMFVSTLLLVGALTIQNSGGDKWASYSAIGFVLLFVISFATGPGAIPWFFVSEIFDSSARGNANSLAVMVNWAANLLVGLTFLPINNLMQQYSFFIFSGFLAFFIFYTWKFVPETKGKSIIEQIQAEFEKRK

[0319] The predicted coiled-coil domain is from 237-258 (SEQ ID NO:209): RNEAESALKKLRDTEDVSTEIE

[0320] This transporter contains a coiled coil domain in common with theglut4 insulin responsive mammalian glucose transporter and the glut1mammalian thrombin responsive glucose transporter of platelets. Thiscoiled coil domain may mediate the tethering of these subfamily ofglucose transporters adjacent to the plasma membrane so that thesetransporters can be fused upon triggering signals, for example, frominsulin.

[0321] We have verified that the localization of the H17B01 glucosetransporter is responsive to daf-2 insulin like signaling. Inparticular, the transporter is suspended in vesicles in a daf-2 mutantbut is placed in the cell membrane in wild type animals with normalinsulin like signaling. The insulin responsive fusion of thesetransporters with the cell membrane is most easily observed in thenervous system of C. elegans. This discovery endorses theglucoregulatory role of DAF-2 insulin like signaling in C. elegans,further confirming the orthology with mammalian insulin regulation ofglucose transport. It also points out a possible regulatory role forglucose transport in the nervous system. It is possible that theregulation of sugar metabolism by insulin in the brain may be moreimportant in humans than has previously been appreciated. The study ofhuman insulin responses have been focused on peripheral tissues, but itis entirely possible that the central responses to insulin are key inthe disease progression.

[0322] We have also shown that the glucose transporter genes of C.elegans are transcriptionally responsive to insulin signaling. Thepromoter of this gene is a good candidate for finding DAF-16 bindingsites and DAF-3 binding sites. In mammals, glucose transporters aretranscriptionally regulated by insulin signaling, suggesting that theconnection between DAF-16 and the glucose transporter may be general tothe DAF-16 homologues, AFX, FKHR, and FKHRL1 and mammalian glucosetransporters such as Glut4 whose transcription is regulated by insulin.Indeed we find that the expression of the glucose transporter GFP fusionis downregulated in starved wild type animals but is not sodownregulated in daf-16 mutant animals, suggesting that it is daf-16activity that represses the expression of this gene.

[0323] Synergistic Control of Metabolism and Diapause by Insulin andTGF-β Signaling Pathways

[0324] In addition to DAF-2 signaling, the DAF-7 TGF-β neuroendocrinesignal is also necessary for reproductive development of C. elegans (Renet al., Science 274: 1389-1391, 1996; Schackwitz et al., Neuron 17:719-728, 1996). The signals in these two pathways are not redundant:animals missing either daf-2 signaling or daf-7 signaling (FIG. 3) shifttheir metabolism and arrest at the dauer stage (Table IX). In additionthe phenotypes caused by mutations in either pathway are stronglysynergistic, suggesting that the two pathways are integrated.Synchronised eggs were grown and counted as described above. daf-1(m40)and daf-2(e1370) form 100% dauer at 25° C. Numbers shown in Table IXindicate percentage dauer formation and number of animals counted (inparenthesis). Data presented is the sum of three independent trials.TABLE IX Synergy of daf-1 and daf-2 % dauer formation ° C. 20° C. daf-1(m40)  0.0 (532) 1.9 (909) daf-2 (e1370)  0.0 (798) 3.8 (503) daf-1(m40); 19.4 (747) 100 (718) daf-2 (e1370)

[0325] This data indicates that DAF-7 TGF-β signals and DAF-2 ligandinsulin-like signals are integrated. In support of this model, weakmutations in the daf-2 insulin signaling pathway and in the daf-7 TGF-βsignaling pathway are highly synergistic (Table IX). Genetic epistasisanalysis indicates that the DAF-7 and DAF-2 pathways are parallel ratherthan sequential (Vowels and Thomas, Genetics 130: 105-123, 1992;Gottlieb and Ruvkun, Genetics 137: 107-120, 1994). That is, daf-16mutations strongly suppress daf-2 mutations but not daft7, daf-1, ordaf-4 mutations, whereas daf-3 mutations strongly suppress daft7, daf-1,and daft4 mutations, but not daf-2 mutations. Analogous synergismbetween activin and FGF tyrosine kinase pathways in Xenopus mesoderminduction has been noted (Green et al., Cell 71: 731-739, 1992).

[0326] A dauer-inducing pheromone regulates the production of DAF-7 bythe ASI sensory neuron (Ren et al., Science 274: 1389-1391, 1996;Schackwitz et al., Neuron 17: 719-728, 1996). Because animals carryingdaf-7 nonsense or truncation mutations are responsive to pheromone(Golden and Riddle, Proc. Natl. Acad. Sci. U.S.A. 81: 819-823, 1984), wefurther suggest that the production of the insulin-like ligand for DAF-2is also regulated by pheromone. It is not yet clear whether these DAF-7and DAF-2 signals converge in target tissues or in other regulatory(i.e., hormonal) cells; however the expression of the DAF-7 receptorpathway genes in essentially all target tissues (infra) suggests thatintegration occurs there.

[0327] DAF-7 and Diabetes

[0328] Based on the data herein, we propose that in humans as in C.elegans, both a DAF-7-like neuroendocrine signal and insulin arenecessary for metabolic control by insulin. According to this model, thefailure of target tissues to respond to insulin signals in Type IIdiabetic patients could be due to defects either in the insulin orTGF-β-like control pathways. Pedigree analysis has shown a stronggenetic component in Type II diabetes (Kahn et al., Annu. Rev. Med. 47:509-531,1996). In addition, obesity is also a major risk factor in TypeII diabetes (Kahn et al., Annu. Rev. Med. 47: 509-531,1996). Genetic orobesity-induced (Hotamisligil et al., Science 259: 87-91, 1993;Lonnqvist et al., Nat Med 1: 950-953, 1995) declines in a DAF-7-likesignaling pathway could underlie the lack of response to insulin in TypeII diabetes, just as in C. elegans daf-7 mutants cause metabolic defectsvery similar to daf-2 mutants. The discovery that the DAF-7 and DAF-2pathways converge indicates that DAF-7 hormonal signals are defective indiabetic conditions (for example, Type II diabetes), and thatadministration of human DAF-7 is useful for ameliorating the glucoseintolerance, ketoacidosis, and atherosclerosis associated with diabetes.This is shown schematically in FIGS. 17, 18, and 23.

[0329] Whereas the DAF-7 TGF-β like and DAF-2 insulin-like signalingpathways converge to control diapause and metabolism, only theDAF-2/AGE-1 pathway has been implicated in reproductive adult stagelongevity control in the absense of dauer formation (Larsen et al.,Genetics 139: 1567-1583, 1995; Kenyon et al., Nature 366: 461-464, 1993;Dorman et al., Genetics 141: 1399-1406, 1995; and Morris et al., Nature382: 536-539, 1996). Both pathways control the longevity increaseassociated with dauer arrest, since dauer larvae live much longer thanreproductive C. elegans (Riddle, In: Caenorhabditis elegans II, D.Riddle, T. Blumenthal, B. Meyer, J. Priess, ed., Cold Spring HarborLaboratory, Cold Spring Harbor, N.Y., 1997, pp. 739-768; Kenyon, op cit.pp., 791-813: Chayen and Bitensky, Practical Histochemistry, Chichester;N.Y.: Wiley, 1991. The distinction between DAF-7 and DAF-2 regulation oflongevity could also reflect a more profound regulation of metabolism bythe DAF-2 pathway than the DAF-7 pathway (FIG. 4). For example, based onprecedents from TGF-β signaling in other systems and analysis of thispathway in C. elegans, all of the known signaling output of the DAF-7TGF-β pathway are via downstream Smad transcriptional regulation(infra). Insulin signaling, and by extension, DAF-2 signaling, is moreramified: outputs from this receptor regulate sugar transport, metabolicenzyme activities, translation of mRNAs encoding these and otherenzymes, as well as transcription (White and Kahn, J. Biol. Chem. 269:1-4, 1994). We suggest that it is the regulatory output distinct to theDAF-2 pathway that controls longevity. Alternatively, TGF-β andinsulin-like signals may converge only during the L1 stage, whendiapause is regulated, and that after this stage, only DAF-2 signalingis necessary for normal metabolic control.

[0330] The involvement of insulin and TGF-P signaling in C. elegansdiapause control suggests that the homologous human pathways maysimilarly mediate response to famine. Just as environmental extremes canselect for variation in the genetic pathways that regulate C. elegansdauer formation, famines and droughts in human history may have selectedfor analogous variants in the human homolog of the daf genes. In fact,heterozygous mice carrying either the db or ob recessive diabetes genes,survive fasting about 20% longer than wild type controls (Coleman,Science 203: 663-665, 1979). The high frequency of Type II diabetes inmany human populations may be the legacy of such selections.

[0331] The DAF-3 Smad Protein Anatagonizes DAF-7 TGF-β ReceptorSignaling in the C. elegans Dauer Regulatory Pathway

[0332] In response to environmental signals C. elegans arrestsdevelopment at the anatomically and metabolically distinctivethird-larval dauer stage (Riddle In: C. elegans N, D. L. Riddle, T.Blumenthal, B. J. Meyer, J. R. Priess, eds., Cold Spring Harbor Press,1997, pp. 739-768). Pheromone signal is transduced by chemosensoryneurons (Bargmann and Horvitz, Science 251:1243, 1991) which couple to aTGF-β signaling pathway (Ren et al., Science 274:1389, 1996; Schackwitzet al., Neuron 17:719, 1989), as well as an insulin-related signalingpathway (as discussed, infra) to trigger changes in the development ofthe many tissues remodeled in dauer larvae (Riddle, supra). Mutations indaf-7 (a TGF-β homolog (Estevez et al., Nature 365:644, 1993)), daf-4 (atype II TGF-β receptor (Estevez et al., Nature 365:644, 1993)), daf-1 (atype I TGF-β receptor), daf-8, and daf-14 (Smad homolog) causeconstitutive arrest at the dauer stage even in the absence of pheromone.These genes constitute a neuroendocrine signaling pathway that is activeduring non-dauer development: the DAF-7 TGF-β signal is produced by thesensory neuron ASI during nondauer development, whereas daf-7 expressionin this neuron is inhibited during dauer-inducing conditions (Ren,supra).

[0333] daf-7 and its receptors and Smad proteins are antagonists todaf-3. The dauer constitute phenotypes of mutations in the daf-7 signaltransduction pathway genes (including putative null mutations) are fullysuppressed by mutations in daf-3. These genetic data indicate that inthe absence of daf-7 signaling, daf-3 acts to induce dauer arrest.

[0334] To discern the molecular basis of the DAF-3 function in thispathway, we determined the sequence and expression pattern of daf-3.Cosmids in the daf-3 genetic region were assayed for gene activity bytransformation. Cosmid B0217 partially complemented a daf-3 mutation,while other cosmids from the region did not (FIG. 5A). A subclone ofB0217 containing only the Smad homolog, but no other coding regions alsorescued daf-3. Our detection of mutations in the Smad homolog (seebelow) confirmed its assignment to daf-3. Analysis of daf-3 cDNAsrevealed that the gene was transcribed from fifteen exons and wasalternatively spliced upstream of the region conserved in Smad proteins.(FIG. 5B) The biological activity of these alternatively splicedisoforms is unknown. The nucleotide (SEQ ID NO: 11) and amino acidsequences (SEQ ID NO: 12) of DAF-3 are shown in FIGS. 11 and 12,respectively.

[0335] Thus far, the C. elegans DAF-3 Smad protein is most closelyrelated in sequence to DPC4, which is a putative cofactor for Smad1,Smad2, and Smad3 (Zhang et al., Nature, 383:168, 1996; Lagna et al.,Nature, 383:832, 1996; Savage et al., Proc.Natl.Acad.Sci., 93:790, 1996;Hahn et al., Science, 271:350 (1996). Smads have two conserved domains(Wrana et al., Trends Genet., 12:493, 1996). DAF-3 has these twodomains; compared to its closest known relative DPC-4, daf-3 has 55%amino acid identity in domain I and 30% in domain II (FIG. 5C). However,DPC-4 is not the mammalian DAF-3 homologue: C. elegans Sma-4, forexample, is more closely related to DPC-4 than DAF-3.

[0336] We identified three mutations in daf-3, all of which wereisolated as suppressors of daf-7(e1372). mgDf90 is a homozygous viabledeletion of 15-90 kb that removes the entire Smad gene (FIG. 5A). mgDf90was identified as a spontaneous mutation that suppressed daf-7 in thestrain of GR3 00 (daf-7 (e1372) 111; mut-6(st 702) unc-22 (St]92) IV).Thus, suppression of the daf-7 dauer constitutive phenotype of daft3 isdaft3 null phenotype, demonstrating that wild-type DAF-3 actsantagonistically to signaling from the DAF-7 TGF-β pathway signaling.daf-3(mg125) and daf-3(mg132) are missense mutations that alterconserved residues in domains 1 and 2 respectively (FIG. 5C). Most ofthe mutations detected in other Smads localize to a 45 amino acidsegment of domain II (Wrana et al., Trends in Genet. 12:493, 1996).Clustering of mutations is observed even in DPC4, for which homozygousnull mutations have been identified (Hahn et al., Science 271:350,1996), so the clustering is unlikely to be due to selection for non-nullmutations. This hotspot region was sequenced in nine daf-3 alleles, andno mutations were detected. This difference in mutation location may bea simple statistical anomaly, or may indicate functional differencesbetween DAF-3 and other Smad proteins, consistent with the fact thatDAF-3 is antagonized, rather than activated, by an upstream TGF-βmolecule.

[0337] To determine where DAF-3 may function in control of dauerformation, we examined the expression pattern of a functionaldaf-3/Green Fluorescent Protein (GFP) fusion gene. This was accomplishedby replacing a AvrII/SacI fragment from pGP8 with a PCR product in whichseveral restriction sites were inserted after the last codon of daf-3before the stop codon. A GFP/unc-54 3′ end PCR product from pPD95.81 wascloned into the 3′ restriction sites to produce pGP19. This DAF-3/GFPfusion partially rescues a daf-3 mutant (FIG. 7). GFP fluorescencetherefore indicates the functional location of DAF-3. DAF-7 signalingfrom the ASI neuron begins during the L1 stage, and neuron ablations anddauer-formation assays in various environmental conditions indicate thatthe signal for dauer formation is also received during the first twolarval stages (Ren et al., Science 274:1389, 1996, Schackwitz et al.,Neuron 17:719, 1996; Bargmann and Horvitz, Science 251:1243, 1991;Golden and Riddle, Developmental Biology 102:368, 1984; Swanson andRiddle, Developmental Biology 84:27, 1981). Therefore, we mostextensively examined L1 larvae.

[0338] Almost every transgenic animal showed strong daf-3/GFP expressionin head neurons (FIG. 6A), the ventral nerve cord (both cell bodies andprocesses, see FIG. 6B), the intestinal cells (FIG. 6C), especially themembrane adjacent to the intestinal lumen, the tail hypodermis, and tailneurons. For all GFP scoring, animals were grown at 25-26° C. Forscoring of DAF-3/GFP in wild-type and in dauer constitutive mutantbackgrounds, three or more lines were scored in each case. A largenumber of animals were surveyed to determine the expression pattern, andat least 30 animals were scored head-to-tail, and expression was talliedfor each tissue. About half of the transgenic animals have weakexpression in V blast cells, P blast cells, hyp7 hypodermal cells, andthe pharynx. The weak expression impedes cell identification, but themain body of the pharynx is filled, implying expression in pharyngealmuscle (FIG. 6A). Expression is rarely detected in dorsal body wallmuscle. The expression pattern in older larvae and adults is similar tothat of L1 animals. In addition, DAF-3/GFP is expressed in the distaltip cells and in their precursors, Z1.a and Z4.p, throughout development(FIG. 6D, FIG. 8). DAF-3/GFP is also strongly expressed in unidentifiedvulval cells. In wild-type embryos of 200-400 cells, DAF-3/GFP isexpressed uniformly thoughout the embryo (FIG. 6E). Under the conditionsof the experiment, which promote reproductive growth, the subcellularlocalization of the DAF-3/GFP protein is mainly cytoplasmic (FIGS. 6B-E,and see below).

[0339] Because DAF-3 activity may be regulated by the DAF-1 and DAF-4TGF-β receptors, we examined the expression of a DAF-4/GFP fusion inwild-type (FIGS. 6A-6G). This construct complements a daf-4 mutant. A 10kb SalI fragment from cosmid C05D2 contains 3 kb of sequence upstream ofthe daf-4 transcriptional start, and all of the daf-4 coding regionexcept codons for the last fourteen residues of daf-4. This fragment wassubcloned into the SalI site of the GFP plasmid TU#61 (Chalfie et al.,Science 263: 802-805, 1994). This plasmid was injected into thedaf-4(m72) strain to test the fusion for DAF-4 activity. More than 95%of the transgenic animals were rescued for the dauer-constitutive andsmall phenotypes of daf-4(m72), indicating that the fusion has robustDAF-4 activity. The pattern of DAF-4/GFP expression is similar to thatof daf-3/GFP, except that DAF-4/GFP is localized to membranes,consistent with its role as a receptor. DAF-4/GFP is expressed morestrongly in the pharynx (FIGS. 6F-G), and more weakly in the ventralnerve cord cell bodies and the body hypodermis. Expression of DAF-4/GFPin wild-type animals is detected later than DAF-3/GFP. DAF-4/GFP isfirst detectable at late embryogenesis when the embryo resembles an L1larva. The DAF-4/GFP construct contains an older version of GFP than inDAF-3/GFP; in the older version, the chromophore takes longer to mature.To verify that the difference in embryonic expression of DAF-4/GFP andDAF-3/GFP is not an artefact of the slower maturation time in the daf-4strain, we used anti-GFP antibodies to assay GFP. These antibodiesshould recognize the two forms of GFP equally well. We found that theantibodies recapitulated the results with direct GFP fluorescence:DAF-3/GFP is expressed in early embryos; DAF-4IGFP is not. DAF-4/GFP isalso not expressed in membrane surrounding the intestinal lumen, unlikeDAF-3/GFP.

[0340] The combination of the DAF-3 and DAF-4 expression patternssuggests that these genes act in target tissues to transducepheromone-regulated DAF-7 neuroendocrine signals. The early expressionof DAF-3 in embryos is also consistent with a model that DAF-3 actsduring embryonic development, for example, to mediate the development ofneuronal pathways that emit neuroendocrine signals that antagonize DAF-7TGF-β signaling during the L1 stage. However our data indicates thatDAF-3 functions in transducing environmental signals during the L1 andL2 stages. This is supported by the following observations. (1) DAF-7TGF-β signal from ASI neurons occurs during the L1 and L2 stages and isrepressed by dauer-inducing environmental conditions. (2) Expression ofthe DAF-4 type II receptor begins in very late embryogenesis. (3)Expression patterns of DAF-3 and DAF-4 are coincident in most of thetissues remodeled during dauer morphogenesis. For example, the cuticlesecreted by the hypodermis is modified, the pharynx is slimmed, and thelumen of the intestine is less convoluted. In addition, somatic gonaddevelopment is arrested in dauers, and the distal tip cell, in whichDAF-3 is expressed, is an important regulator of that development(Kimble, Developmental Biology 87:286, 1981). In addition, the intestineand hypodermis of dauer larvae contain large fat stores indicative of ametabolic shift to fat storage. The expression of both the DAF-4 TGF-βfamily receptor kinase and the DAF-3 Smad protein in these targettissues is consistent with a model that the DAF-7 neuroendocrine signalfrom the ASI neuron is received directly by these tissues during nondauer development. In addition, the observation that DAF-4 and DAF-3 areexpressed in many of the same cells is consistent with a model thatDAF-4 signaling to downstream Smads (DAF-8 and DAF-14 are likelycandidates) directly regulates DAF-3 gene activity. The TGF-β regulatednuclear localization and transcriptional activation of some Smadproteins suggests that DAF-3 might induce the dauer-specific changes byactivating transcription in target tissues of genes required for dauerformation or repressing transcription of genes necessary for nondauergrowth.

[0341] Smad1 and Smad2 relocalize to become predominantly nuclear whenthe upstream TGF-β signaling pathways are activated (Baker and Harland,Genes and Development 10: 1880, 1996; Hoodless et al., Cell 85:489,1996; Liu et al., Nature 381:620, 1996; Macias-Silva et al., Cell87:1215, 1996). In wild-type, DAF-3/GFP is primarily, although notexclusively, cytoplasmic. DAF-3/GFP subcellular distribution wasexamined in head neurons in the vicinity of ASI (the cell that producesthe DAF-7 signal), as well as in intestinal cells. DAF-3/GFP waspredominantly cytoplasmic in all animals. However, in all animals, dimGFP fluorescence was observed in the nucleus of some of the cells withbright fluoresence, and in approximately twenty-five percent of theanimals, equivalent DAF-3/GFP levels in the nucleus and cytoplasm hasobserved in one or more cells.

[0342] Because DAF-3 is antagonized by the other members of the DAF-7TGF-β pathway, we expect that DAF-3 is active (and perhaps localized tothe nucleus) when these genes are inactive. We therefore observed thesubcellular localization of the full-length DAF-3/GFP fusion protein inthe head neurons, tail neurons, and intestine of dauer-constitutivemutant L1 worms, when DAF-3 gene activity is predicted to be highest. InDAF-1(m402), daf-4(m72), daf-7(m62), daf-8(sa233), and daf-14(m77)mutants, DAF-3/GFP was predominantly cytoplasmic, although, as inwild-type, cells were seen with some GFP in the nucleus. In threedaf-4(m72) mutant lines, DAF-3/GFP was localized to the nucleus morethan in wild-type lines. When these strains were crossed to wild-type,the increased nuclear localization was seen in both the daf-4 andwild-type segregants. Thus the increased nuclear GFP was a property ofthe array, rather than of daf-4. Even in the neurons nearest to ASI,where the DAF-7 signal should be strongest, no change in DAF-3/GFPsubcellular localization was detected. The DAF-3/GFP fusion protein ispredominantly cytoplasmic in L1 and L2 stages of larvae induced to formdauers by environmental conditions or by mutations in the insulinreceptor pathway gene daf-2, rather than by mutations in the DAF-7signaling pathway mutants (data not shown). The tissue-specificexpression pattern of DAF-3/GFP was unaltered in these mutantbackgrounds (data not shown).

[0343] The finding that DAF-3/GFP subcellular localization is notstrongly responsive to DAF-7 signaling defects or to dauer-inducingenvironmental conditions does not rule out a role for DAF-3 in thenucleus in dauer formation. Even though we detect no change in DAF-3/GFPsubcellular localization, we do detect some DAF-3/GFP in nuclei, and aminor change in nuclear localization or a change in activity due tophosphorylation state may couple DAF-3 to DAF-7 signaling. In fact, thesubcellular localization of Drosophila MAD protein is not detectablyaltered in wild-type when receptor signaling to MAD occurs;relocalization is seen only if the DPP ligand is drasticallyoverexpressed. It is unlikely that a set of undiscovered TGF-β receptorsregulates DAF-3. The C. elegans genome sequence is 90% complete, andthere is only one candidate TGF-β receptor gene other than daft] anddaf-4. If this receptor were a positive regulator of DAF-3, mutantswould be expected to, like daft3 mutants, suppress daf-7 mutants. Thisreceptor acts in a signaling pathway distinct from DAF-3, and it is nota suppressor of daft7.

[0344] The implication from Smad homology that DAF-3 is active in thenucleus is supported by two additional observations. First, DAF-3/GFP isassociated with chromosomes in intestinal cells during mitosis. Thesecells divide at the end of the L1 stage, and antibody staining withanti-GFP antibodies and anti-α-tubulin antibodies reveals that DAF-3/GFPis found associated with DNA between the spindles during mitosis (FIG.8A). We see DAF-3 GFP co-localized with DAPI from prophase to lateanaphase. DAF-3/GFP was associated with nuclei in prophase by thefollowing criteria. The spindles were present on either side of thenucleus, but the nucleus has not completely broken down. In particular,an indistinct nucleolus was present. DAF-3/GFP continues to co-localizewith DAPI until the chromosomes have separated to the normal distance bywhich nuclei are separated in the intestine, implying continuedassociation until telophase. At this point in mitosis, DAF-3/GFP fadesand becomes undectectable before the nuclei reform the nuclear envelopeand nucleolus. Thus, DAF-3 can, indirectly or directly, bind DNA,consistent with the hypothesis that it is a transcriptional activatorthat acts in the nucleus. DAF-3 is not predicted from its mutantphenotype to have a role in mitosis. It is possible that the brighterGFP on mitotic chromosomes is due to increased access to DNA due to thebreakdown of the nuclear envelope. The second indication of DAF-3function in the nucleus is our examination of a truncated DAF-3/GFPfusion that is missing most of conserved domain II. The truncatedconstruct pGP7 consists of 8 kb of daf-3 fused to GFP. An 8 kb EcoRIfragment from B0217 was cloned into the EcoRI site of pBluescript SK(−).A Pvul/SalI fragment of this subclone was ligated to a Pvul/Sallfragment from the GFP vector pPD95.81. The resulting plasmid contains˜2.5 kb of sequence upstream of the 5′-most exon of daf-3 and codingregion through the first 58 amino acid residues of domain II. Theremaining 175 amino acids of daf-3 and the 3′ noncoding region arereplaced with GFP and the unc-54 3′ end. Three transgenic lines wereisolated, and all had a similar phenotype. This fusion proteininterferes with dauer induction; like a daf-3 loss-of-function mutant,it suppresses mutations in daf-7 (FIG. 7). This truncated protein ispredominantly nuclear, suggesting that it represses dauer formation byacting in the nucleus (FIG. 8B). This result implies that wild-typeDAF-3 also has a function in the nucleus. The full-length DAF-3/GFPconstruct also suppresses mutations in daf-7, as does a full-lengthDAF-3 construct without GFP (FIG. 7). This suppression indicates thatoverexpression of DAF-3 in the cytoplasm has dominant-negative activity,perhaps due to interference with DAF-3 interactions with receptors orcofactors such as other Smads.

[0345] The constitutive nuclear localization of truncated DAF-3/GFPfusion gene missing part of domain II suggests that control of Smadlocalization is complex. A Smad2 construct containing only the conserveddomain II of the protein is constitutively nuclear, leading to thesuggestion that the C-terminus is an effector domain, and the N-terminustethers the protein in the cytoplasm (Baker and Harland, Genes andDevelopment 10:1880, 1996; Hoodless et al., Cell 85:489, 1996; Liu etal., Nature 381:620, 1996; and Macias-Silva et al., Cell 87:1215, 1996).Our construct, in which the N-terminus is intact, is nuclear. Perhapsboth domains provide tethering in the cytoplasm, and any disruptionleads to nuclear entry. Alternatively, entry may be differentlyregulated for DAF-3 and Smad2. Significantly, Smad2, like Smad1 andSmad3 has an SSXS motif at the C terminus (Zhang et al., Nature 383:168,1996; Lagna et al., Nature 383:832, 1996; Savage et al., PNAS 93:790;Baker and Harland, Genes and Development 10:1880, 1996; Hoodless et al.,Cell 85:489, 1996; Liu et al., Nature 381:620, 1996; Macias-Silva etal., Cell 87:1215, 1996; and Graf et al., Cell 85:479, 1996); this motifis a substrate for phosphorylation and required for nuclear localizationof Smad2 (Baker and Harland, Genes and Development 10:1880, 1996;Hoodless et al., Cell 85:489, 1996; Liu et al., Nature 381:620, 1996;and Macias-Silva et al., Cell 87:1215, 1996). DAF-3 has a single serinein the C terminal region, and DPC4 has no serines at this location.

[0346] We propose a model for the TGF-β pathway in dauer formation(FIGS. 9A-B). The DAF-7 TGF-β ligand, which is produced by the ASIsensory neuron in conditions that induce reproductive organ (Ren et al.,Science 274:1389, 1996; Schakwitz et al., Neuron 17:719, 1996), binds tothe DAF-1/DAF-4 receptor kinases on target tissues. These receptorkinases then phosphorylate the Smads DAF-8 and/or DAF-14, analogous tothe phosphorylation and activation of Smad1, Smad2, and Smad3 (Zhang etal., Nature 383:168, 1996; Lagna et al., Nature 383:832, 1996; Savage etal., PNAS 93:790, 1996). We propose that DAF-3 functions like itsclosest homolog, DPC4, which dimerizes with phosphorylated Smad1 andSmad2, even under conditions that do not lead to detectable DPC4phosphorylation (Zhang et al., Nature 383:168, 1996; Lagna et al.,Nature 383:832, 1996; and Savage et al., PNAS 93:790). We suggest thatDAF-3 forms dauer-inducing homodimers in the absence of DAF-7 signaling(FIGS. 9A-B) that are disrupted when DAF-3 heterodimerizes with aphosphorylated DAF-8 and/or DAF-14 (FIG. 9B). Because daf-8 and daf-14are only partially redundant (Riddle et al., Nature 290:668, 1981;Vowels and Thomas, Genetics 130:105, 1992; and Thomas et al., Genetics134:1105, 1993), each is likely to perform a unique function in dauerformation. Thus, DAF-3/DAF-8 dimers are proposed to have differentactivity from DAF-3/DAF-14. Perhaps each activates a subset of genesrequired for dauer formation. The formation of DAF-8/DAF-3 and/orDAF-14/DAF-3 heterodimers antagonizes dauer induction by the DAF-3/DAF-3homodimer. A daf-8(sa233); daf-14(m77); daf-3(mgDf90) triple mutant canform some dauers in dauer-inducing conditions (data not shown); wesuggest that activity of the Daf-2 pathway may induce dauer in thismutant background.

[0347] The dauer genetic pathway represents a neuroendocrine pathway forcontrol of a diapause arrest and its associated shifts in metabolism andrates of senescence (Ren et al., Science 274:1389, 1996; Schackwitz etal., Neuron 17:719, 1996; and Georgi et al., Cell 61:635, 1990).Similarly, activins, members of the TGF-β family, were originallyidentified based on their neuroendocrine regulatory activity, forexample, in regulation of gonadotropin signaling (Vale et al., inPeptide Growth Factors and Their Receptors, Sporn and Roberts, Eds.,Springer-Verlag, Heidelberg, 1990). The DAF-7 signal is not the onlysignal that is necessary for reproductive development. Because mutationsin the DAF-7 TGF-β pathway and in the DAF-2 insulin-like signalingpathway cause the same dauer arrest phenotypes, we propose that both theDAF-7 TGF-β signals and the DAF-2 insulin-like signals are necessary forreproductive development. The involvement of an insulin-like signalingpathway in diapause with its associated metabolic shifts is consistentwith metabolic regulation by insulin in vertebrates. Genetic experimentsindicate that these pathways act in parallel (Riddle et al., Nature290:668, 1981; Vowels and Thomas, Genetics 130:105, 1992; and Thomas etal., Genetics 134:1105, 1993). In particular, daf-3 mutants efficientlysuppress daf-7 mutants, but not daf-2 mutants, and daf-16 mutantsefficiently suppress daf-2 mutants, but poorly suppress daf-7 mutants.It is not yet clear whether these two signaling pathways coverage ontarget tissues or in other regulatory (e.g., hormone secreting) cells.However, the expression of the DAF-7 receptor pathway genes and theDAF-16 gene in essentially all target tissues suggests that the TGF-βand insulin pathways act there, and therefore that integration mustoccur there. Thus, we suggest in FIGS. 9A and 9B that the DAF-2 pathwayconverges on DAF-3/DAF-8DAF-1 Smad signaling to regulate metabolic geneexpression in target tissues.

[0348] The integration of insulin-like and TGF-β signals in metaboliccontrol has important implications for the molecular basis of diabetes.For example, these converging pathways for dauer control suggest that inhuman metabolic control both a DAF-7-like signal and insulin may benecessary for full metabolic control. Thus, declines in signaling fromthe human homolog of DAF-7 could underlie the insulin resistanceassociated with Type II diabetes. In fact the dauer pheromone has beenreported to be a fatty acid and to cause down-regulation of DAF-7expression (Ren et al., supra). Thus pheromone regulation of metabolismmay be related to mammalian obesity induced diabetes, and a humanmutation in DAF-7 or its receptors is expected to contribute to adiabetic condition, just like mutations in the insulin receptor. Inaddition if obesity or age or both cause human DAF-7 to decline, e.g.,under high leptin conditions, such a result would explain lateonset/obesity related diabetes.

[0349] Converging Transcriptional Outputs of the Insulin and DAF-7Endocrine Signals

[0350] Further support for the view that insulin-like and DAF-7neuroendocrine signals regulate common transcriptional targets via theDAF-16 Forkhead protein and the DAF-8, DAF-14, and DAF-3 Smad proteins,respectively, comes from the following experiments. First, we have shownthat the a 30 base element in the myosin 2 promoter, previously shown tobind to DAF-3 and be responsive to DAF-7 signaling, is also responsiveto DAF-2 insulin like signaling (Okkema, Development, 1994,120(8):2175-86). This element has the following sequence (SEQ ID NO:210): TCTCGTTGTTTGCCGTCGGATGTCTGCC. The bolded nucleotide positions areconserved in the Xenopus activin response element. Specifically, a GFPfusion of this element (multimerized 6×) expresses 24 units offluorescence in wild type, but less than 4 units in a daf-4 TGF-βsignaling mutant or in a daf-2 insulin- like signaling mutant. Thisrepression of expression by lack of neuroendocrine input is relieved bymutations in daf-3 in the case of the daf-4 mutant and daf-16 in thecase of the daf-2 mutant. The daf-4; daf-3 double mutant expresses 12units of GFP fluorescence and the daf-2; daf-16 double mutant expresses18 units of GFP fluorescence. These data strongly support the model thatDAF-16 and DAF-3 bind to the same element in the myosin promoter. Thisis biologically relevant since the pharynx is smaller in dauer arrestedanimals, consistent with lower pharyngeal myosin expression in animalswith defective DAF-7 or DAF-2 signaling.

[0351] Serotinergic Input to the Dauer Pathway

[0352] We have further shown that mutants completely lacking inserotonin have defects in metabolic control. Specifically we haveknocked out the serotonin synthesis gene, tryptophan hydroxylase, cod-5,by directed mutagenesis. Cod-5 is the aromatic amino acid hydroxylasethat synthesises serotonin from the precursor L tryptophan (FIG. 42). Itis the rate determining step in the synthesis of serotonin, and we haveshown that it is only transcribed in the serotinergic neurons of C.elegans.

[0353] Our deletion mutant deletes most of the cod-5 gene and causes aframeshift in the remaining coding region (FIG. 43). This mutant makesno serotonin as measured with antiserotonin antibody staining. Thepromoter of cod-5 fused to GFP displays all of the serotinergic neuronsof C. elegans, NSM, HSN, ADF, RIH (but not VC4 and VC5 which probablyuptake 5HT from surrounding serotinergic neurons).

[0354] The cod-5 null mutant has a number of behavioral abnormalities,including egg laying defects, fertility declines, thermal regulationdefects, and hyperactive movement, but most dramatic is that up to halfof the mutant animals arrest at the dauer stage and accumulate largeamounts of fat. This is quite similar to the regulation of feeding,appetite, and metabolism by serotonin in vertebrates. The behavior ofcod-5 mutants also shows the hallmarks of defects in DAF-7 signaling:the cod-5 mutant animals tend to cluster at the edge of a lawn ofbacteria, as if they are attracted to each other and repelled by thebacteria. This type of behavior is also seen in an NPY receptor mutant,bor-1. It is possible that DAF-7 normally regulates the secretion of theNPY like ligand of bor-1, and 5HT regulates DAF-7. This would explainthe dauer arrest and bordering behavior of cod-5 mutants, that it actshigh in the pathway of DAF-7.

[0355] 5HT production is normally under feeding and temperature control:wild type C. elegans makes almost undetectable levels of 5HT whenstarved and makes lower amounts at low temperature. We believe that 5HTreceptors are expressed on particular regulatory neurons that alsoexpress or respond to the DAF-7 or DAF-2 signals, either as ligands orreceptors. 5HT regulation of metabolism may occur via the DAF-7 pathwayor the DAF-2 pathway, for example, by regulating expression of DAF-7,expression or secretion of the DAF-2 ligands, or signaling from thereceptors. Moreover, given that cod-5 mutations induce the samebehavioral changes (that is, crowding at the edge of food) as daf-7mutants (in distinction from daf-11 or daf-2 pathway mutants), webelieve that there is 5HT input to the daf-7 pathway.

[0356] Our discovery of 5HT input to C. elegans metabolic control isimportant because it may reveal the mechanism by which drugs likedexfenfluramine and fluoxetine control weight in humans (Weiser et al.,J Clin Pharmacol, 1997, 37(6):453-73). For example, if 5HT input to wormmetabolic control is via the DAF-7 signaling system, the mechanism ofaction of serotinergic signals in metabolic control in mammals may bevia serotonin modulation of expression or secretion of the mammalianDAF-7 homologue.

[0357] In addition, the cod-5 promoter-GFP fusion is valuable for itsability to display serotinergic neurons, for example, for screens ofmutants that fail to generate serotinergic neurons or screens formutants that generate ectopic serotinergic neurons. Such a promoterfusion, for example, facilitates the identification of the neuralpathway for the generation of 5HT neurons. In fact, the transcriptionfactor unc-86 has already been identified as part of that pathway.Unc-86 mutants cause a lack of serotonin synthesis, due to loss of cod-5expression in all serotinergic neurons except ADF, and we have shownthat the accumulation of serotonin in the NSM in an unc-86 mutant is dueto reuptake of 5HT, presumably from the ADF site of serotonin synthesis.Prozac, a reuptake inhibitor, causes 5HT accumulation in the NSM todisappear in unc-86 mutants.

[0358] Cloning Mammalian DAF Sequences

[0359] Based on our isolation of novel nematode DAF cDNAs, the isolationof mammalian DAF nucleic acid sequences, including human DAF sequences,is made possible using the sequences described herein and standardtechniques. In particular, using all or a portion of a nematode DAFsequence, one may readily design oligonucleotide probes, includingdegenerate oligonucleotide probes (i.e., a mixture of all possiblecoding sequences for a given amino acid sequence). Theseoligonucleotides may be based upon the sequence of either strand of theDNA.

[0360] Exemplary probes or primers for isolating mammalian DAF sequencespreferably correspond to conserved blocks of amino acids, for example,conserved DAF motifs. Exemplary motifs are as follows: DAF-2  (tyrosinekinase domain) (SEQ ID NO: 33) 1242KFHEWAAQICDGMAYLESLKFCHRDLAARNCMINRDETVKIGDFGMARDLFYHDYYKPSGKRMMPVRWMSPESLKDGKFDSKSDVWSFGVVLYEMVTLGAQPYIGLSNDEVLNYIGMARKVIKKPEC 1368 DAF-2  (ligand bindingdomain) (SEQ ID NO: 34) 242 NTTCQKSCAYDRLLPTKEIGPGCDANGDRCHDQCVGGCERVNDATACHACKNVYTIKGKCIEKCDAHLYLLLQRRCVTREQCLQLNPVLSNKTVPIKATAGLCSDKCPDGYQINPDDHRECRKCVGKCELVC 372 DAF-2  (67 amino acidmotif) (SEQ ID NO: 79) 1158 AIKINVDDPASTENLNYLMEANIMKNFKTNFIVQLYGVISTVQPAMYVMEMMDLGNLRDYLRSKRED  1224 DAF-2  (54 amino acid motif) (SEQ ID NO:80) 1362 VIKKPECCENYWYKVMKMCWRYSPRDRPTFLQLVHLLAAEASPE FRDLSFVLTD  1415DAF-2  (69 amino acid motif) (SEQ ID NO: 81) 404KQDSGMASELKDIFANIHTITGYLLVRQSSPFISLNMFRNLRRIEAKSLFRNLYAITVFENPNLKKLFD  472 DAF-2  (52 amino acid motif) (SEQ ID NO:82) 98 FPHLREITGTLLVFETEGLVDLRKIFPNLRVIGGRSLIQIIYAL IIYRNPDLE  149DAF-2  (46 amino acid motif) (SEQ ID NO: 83) 149EIGLDKLSVIRNGGVRIIDNRKLCYTKTIDWKHLITSSINDVVV DN  194 DAF-2  (36 aminoacid motif) (SEQ ID NO: 84) 1112YNADDWELRQDDVVLGQQCGEGSFGKVYLGTGNNVV  1147 DAF-3  (Smad Domain I) (SEQID NO: 35) 240 FDQKACESLVKKLKDKKNDLQNLIDVVLSKGTKYTGCITIPRTLDGRLQVHGRKGFPHVVYGKLWRFNEMTKNETRIIVDHCKHAFEM KSDMVCVNPYHYEIVI  342DAF-3  (Smad Domain II) (SEQ ID NO: 36) 690NRYSLGLEPNPIREPVAFKVRKAIVDGIRFSYKKDGSVWLQNRMKYPVFVTSGYLDEQSGGLKKDKVHKVYGCASIKTF  768 DAF-3  (79 amino acid motif)(SEQ ID NO: 85) 819 DSLAKYCCVRVSFCKGFGEAYPER  842 DAF-16 (forkhead DNAbinding domain) (SEQ ID NO: 37) 727KKTTTRRNAWGNMSYAELITTAIMASPEKRLTLAQVYEWMVQNVPYFRDKGDSNSSAGWKNSIRHNLSLHSRFMRIQNEGAGKSSWWV INPDAKPGMNPRRTRERS  1044DAF-16 (103 amino acid motif) (SEQ ID NO: 54) 242KKTTTRRNAWGNMSYAELITTAIMASPEKRLTLAQVYEWMVQNVPYFRDKGDSNSSAGWKNSIRHNLSLHSRFMRIQNEGAGKSSWWV INPDAKPGMNPRRTR  344 DAF-16(41 amino acid motif) (SEQ ID NO: 55) 137TFMNTPDDVMMNDDMEPIPRDRCNTWPMRRPQLEPPLNSSP 177 DAF-16 (109 amino acidmotif) (SEQ ID NO: 56) 236 DDTVSGKKTTTRRNAWGNMSYAELITTAIMASPEKRLTLAQVYEWMVQNVPYFRDKGDSNSSAGWKNSIRHNLSLLISRFMRIQNEGA GKSSWWVINPDAKPGMNPRRTR  344DAF-16 (98 amino acid motif) (SEQ ID NO: 58) 372KPNPWGEESYSDIIAKALESAPDGRLKLNELYQWFSDNIPYFGERSSPEEAAGWKNSLRHNLSLHSRFMRIQNEGAGKSSWWVIINPD AKPGMNPRRTR  469

[0361] Using such motifs, mammalian DAF-2, DAF-3, and DAF-16 genes maybe isolated from sequence databases (for example, by the use of standardprograms such as Pileup). Alternatively, such sequences may be used todesign degenerate oligonucleotide probes to probe large genomic or cDNAlibraries directly. General methods for designing and preparing suchprobes are provided, for example, in Ausubel et al., Current Protocolsin Molecular Biology, 1996, Wiley & Sons, New York, N.Y.; and Guide toMolecular Cloning Techniques, 1987, S. L. Berger and A. R. Kimmel, eds.,Academic Press, New York. These oligonucleotides are useful for DAF geneisolation, either through their use as probes for hybridizing to DAFcomplementary sequences or as primers for various polymerase chainreaction (PCR) cloning strategies. If a PCR approach is utilized, theprimers are optionally designed to allow cloning of the amplifiedproduct into a suitable vector. PCR is particularly useful for screeningcDNA libraries from rare tissue types.

[0362] Hybridization techniques and procedures are well known to thoseskilled in the art and are described, for example, in Ausubel et al.,supra, and Guide to Molecular Cloning Techniques, supra. If desired, acombination of different oligonucleotide probes may be used for thescreening of the recombinant DNA library. The oligonucleotides are, forexample, labelled with ³²P using methods known in the art, and thedetectably-labelled oligonucleotides are used to probe filter replicasfrom a recombinant DNA library. Recombinant DNA libraries (for example,human cDNA libraries, such as hypothalamus- or pancreas-derived cDNAlibraries, particularly for DAF-2 and DAF-7 cDNAs) may be preparedaccording to methods well known in the art, for example, as described inAusubel et al., supra, or may be obtained from commercial sources.

[0363] For detection or isolation of closely related DAF sequences, highstringency hybridization conditions may be employed; such conditionsinclude hybridization at about 42° C. and about 50% formamide; a firstwash at about 65° C., about 2×SSC, and 1% SDS; followed by a second washat about 65° C. and about 0.1% SDS, 1×SSC. Lower stringency conditionsfor detecting DAF genes having less sequence identity to the nematodeDAF genes described herein include, for example, hybridization at about42° C. in the absence of formamide; a first wash at about 42° C., about6×SSC, and about 1% SDS; and a second wash at about 50° C., about 6×SSC,and about 1% SDS.

[0364] As discussed above, DAF-specific oligonucleotides may also beused as primers in PCR cloning strategies. Such PCR methods are wellknown in the art and are described, for example, in PCR Technology, H.A. Erlich, ed., Stockton Press, London, 1989; PCR Protocols: A Guide toMethods and Applications, M. A. Innis, D. H. Gelfand, J. J. Sninsky, andT. J. White, eds., Academic Press, Inc., New York, 1990; and Ausubel etal., supra. Again, sequences corresponding to conserved regions in a DAFsequence (for example, those regions described above) are preferred foruse in isolating mammalian DAF sequences. Such probes may be used toscreen cDNA as well as genomic DNA libraries.

[0365] Sequences obtained are then examined (for example, using thePileup program) to identify those sequences having the highest aminoacid sequence identity to the C. elegans sequence, particularly in orbetween conserved DAF domains (for example, those domains describedabove). In one particular example, the human FKHR, FKHRL1, and AFX genesare 10³³ more closely related to the DAF-16 forkhead domain than thenext most closely related forkhead domain protein, making FKHR, FKHRL1,and AFX candidates for mammalian DAF-16 genes.

[0366] Following isolation of such candidate genes by sequence homology,the genes are then tested for their ability to functionally complement adaf mutation. This is most readily assayed by transformation of thesequence into a C. elegans strain having an appropriate mutantbackground. Exemplary C. elegans transformation techniques aredescribed, for example, in Mello et al., EMBO J. 10: 3959-3970, 1991,and assays for DAF-2, DAF-3, and DAF-16 polypeptide function aredescribed herein. To be considered useful in the invention, a mammaliansequence need not fully complement a C. elegans defect, but must providea detectable level of functional complementation.

[0367] The DAF, AGE, or AKT gene homologue identified as above, may alsocomplement or alter the metabolic phenotypes of a mammalian cell line.

[0368] For example, addition of DAF-7, TGF-β-like growth factor to aninsulin responsive cell line (e.g., the 3T3-L1 cell line) may accentuateinsulin responsiveness. Similarly genetic transformation of such a cellline with wild type or dominantly activated versions of a DAF, AGE, orAKT gene may alter metabolism. Such perturbations of metabolic controlare stringent tests of candidate genes as DAF, AGE, or AKT homologues.

[0369] In addition, if that mammalian candidate homologue acts in ametabolic control pathway, and is expressed in similar metabolic controltissues (liver, adipose), it is likely to function homologously to DAFproteins from C. elegans. Addition of a wild type or activated DAF, AKT,or AGE protein (for example by VP16 activation of the DAF-3 or DAF-16transcription factors) can confer on cell lines altered metabolicphenotypes. Thus supplying daf, age, or akt gene activity to such a cellline can alter its metabolism. This is one explemplary test ofhomologous DAF function in metabolic control.

[0370] DAF Polypeptide Expression

[0371] In general, DAF polypeptides according to the invention may beproduced by transformation of a suitable host cell with all or part ofDAF-encoding cDNA fragment (e.g., one of the cDNAs described herein orisolated as described above) in a suitable expression vehicle.

[0372] Those skilled in the field of molecular biology will understandthat any of a wide variety of expression systems may be used to providethe recombinant protein. The precise host cell used is not critical tothe invention. The DAF polypeptide may be produced in a prokaryotic host(e.g., E. coli) or in a eukaryotic host (e.g., Saccharomyces cerevisiae,insect cells, e.g., Sf9 or Sf21 cells, or mammalian cells, e.g., COS 1,NIH 3T3, or HeLa cells). Such cells are available from a wide range ofsources (e.g., the American Type Culture Collection, Rockland, Md.;also, see, e.g., Ausubel et al., supra). The method of transformation ortransfection and the choice of expression vehicle will depend on thehost system selected. Transformation and transfection methods aredescribed, e.g., in Ausubel et al. (supra); expression vehicles may bechosen from those provided, e.g., in Cloning Vectors: A LaboratoryManual (P. H. Pouwels et al., 1985, Supp. 1987).

[0373] One preferred expression system is the baculovirus system (using,for example, Sf9 cells and the method of Ausubel et al., supra). Anotherbaculovirus system makes use of the vector pBacPAK9 and is availablefrom Clontech (Palo Alto, Calif.).

[0374] Alternatively, an DAF polypeptide is produced in a mammaliansystem, for example, by a stably-transfected mammalian cell line. Anumber of vectors suitable for stable transfection of mammalian cellsare available to the public, e.g., see Pouwels et al. (supra); methodsfor constructing such cell lines are also publicly available, e.g., inAusubel et al. (supra). In one example, cDNA encoding the DAF protein iscloned into an expression vector which includes the dihydrofolatereductase (DHFR) gene. Integration of the plasmid and, therefore, theDAF protein-encoding gene into the host cell chromosome is selected forby inclusion of 0.01-300 μM methotrexate in the cell culture medium (asdescribed in Ausubel et al., supra). This dominant selection may beaccomplished in most cell types. Recombinant protein expression may beincreased by DIFR-mediated amplification of the transfected gene.Methods for selecting cell lines bearing gene amplifications aredescribed in Ausubel et al. (supra); such methods generally involveextended culture in medium containing gradually increasing levels ofmethotrexate. DIFR-containing expression vectors commonly used for thispurpose include pCVSEII-DHFR and pAdD26SV(A) (described in Ausubel etal., supra). Any of the host cells described above or, preferably, aDHFR-deficient CHO cell line (e.g., CHO DHFR⁻ cells, ATCC Accession No.CRL9096) are among the host cells preferred for DHER selection of astably-transfected cell line or DHFR-mediated gene amplification.

[0375] In yet other alternative approaches, the DAF polypeptide isproduced in vivo or, preferably, in vitro using a T7 system (see, forexample, Ausubel et al., supra, or other standard techniques).

[0376] Once the recombinant DAF protein is expressed, it is isolated,e.g., using affinity chromatography. In one example, an anti-DAF proteinantibody (e.g., produced as described herein) may be attached to acolumn and used to isolate the DAF protein. Lysis and fractionation ofDAF protein-harboring cells prior to affinity chromatography may beperformed by standard methods (see, e.g., Ausubel et al., supra).

[0377] Once isolated, the recombinant protein can, if desired, befurther purified, e.g., by high performance liquid chromatography (see,e.g., Fisher, Laboratory Techniques In Biochemistry And MolecularBiology, eds., Work and Burdon, Elsevier, 1980).

[0378] Polypeptides of the invention, particularly short DAF polypeptidefragments, may also be produced by chemical synthesis (e.g., by themethods described in Solid Phase Peptide Synthesis, 2nd ed., 1984 ThePierce Chemical Co., Rockford, Ill.).

[0379] These general techniques of polypeptide expression andpurification may also be used to produce and isolate useful DAFfragments or analogs (described herein).

[0380] Anti-DAF Antibodies

[0381] Using any of the DAF polypeptides described herein or isolated asdescribed above, anti-DAF antibodies may be produced by any standardtechnique. In one particular example, a DAF cDNA or cDNA fragmentencoding a conserved DAF domain is fused to GST, and the fusion proteinproduced in E. coli by standard techniques. The fusion protein is thenpurified on a glutathione column, also by standard techniques, and isused to immunize rabbits. The antisera obtained is then itself purifiedon a GST-DAF affinity column, for example, by the method of Finney andRuvkun (Cell 63:895-905, 1990), and is shown to specifically identifyGST-DAF, for example, by Western blotting.

[0382] Polypeptides for antibody production may be produced byrecombinant or peptide synthetic techniques (see, e.g., Solid PhasePeptide Synthesis, supra; Ausubel et al., supra).

[0383] For polyclonal antisera, the peptides may, if desired, be coupledto a carrier protein, such as KLH as described in Ausubel et al, supra.The KLH-peptide is mixed with Freund's adjuvant and injected into guineapigs, rats, or preferably rabbits. Antibodies may be purified by anymethod of peptide antigen affinity chromatography.

[0384] Alternatively, monoclonal antibodies may be prepared using a DAFpolypeptide (or immunogenic fragment or analog) and standard hybridomatechnology (see, e.g., Kohler et al., Nature 256:495, 1975; Kohler etal., Eur. J Immunol. 6:5111976; Kohler et al., Eur. J Immunol. 6:292,1976; Hammerling et al., In Monoclonal Antibodies and T Cell Hybridomas,Elsevier, N.Y., 1981; Ausubel et al., supra).

[0385] Once produced, polyclonal or monoclonal antibodies are tested forspecific DAF recognition by Western blot or immunoprecipitation analysis(by the methods described in Ausubel et al., supra). Antibodies whichspecifically recognize a DAF polypeptide described herein are consideredto be useful in the invention. Anti-DAF antibodies, as isolated above,may be used, e.g., in an immunoassay to measure or monitor the level ofDAF polypeptide produced by a mammal or to screen for compounds whichmodulate DAF polypeptide production (for example, in the screensdescribed herein). In one particular example, antibodies to human DAF-7polypeptide are useful for screening blood samples from patients todetermine whether they possess decreased DAF-7 polypeptide levels. Suchantibodies may be used in any immunological assay, for example, an ELISAassay, and a decrease in DAF-7 is taken as an indication of a diabeticcondition, for example, obesity onset Type II diabetes. In anotherparticular example, anti-DAF antibodies are useful for carrying outpedigree analysis. For example, blood samples from individuals may bescreened with anti-DAF-7 antibodies to detect those members of a familywith a predisposition to a diabetic condition. Anti-DAF antibodies mayalso be used to identify cells that express a DAF gene.

[0386] DAF-7 Therapy for Obesity-Onset Type II Diabetes

[0387] Our data indicates that DAF-7 represents an endocrine hormone formetabolic control that acts synergistically with insulin. Declines inDAF-7 may be induced by obesity, just as the dauer pheromone, a fattyacid, causes declines in C. elegans DAF-7 production.

[0388] Accordingly, obesity onset Type II diabetes, glucose intolerance,and the associated atherosclerosis may be treated if DAF-7 hormone isinjected intramuscularly or intravenously (FIG. 23).

[0389] In addition, antibodies to human DAF-7 should detect declines inDAF-7 in pre-diabetic, glucose-intolerant, or obesity induced diabetes.Such antibodies will detect DAF-7 levels in blood, just as insulinlevels are detected in metabolic disease.

[0390] DAF-7 therapeutic potential and dosage can be developed in mousemodels of obesity onset diabetes, for example, the db and ob mouse.

[0391] DAF-7 may be injected either intravenously or intramuscularly, inanalogy to insulin therapy.

[0392] The decision of which classes of diabetics to treat with DAF-7will come from a combination of blood tests for DAF-7 levels and genetictesting to determine which daf, age, or akt mutations a particulardiabetic or pre-diabetic patient carries.

[0393] Screening Systems for Identifying Therapeutics

[0394] Based on our experimental results, we have developed a number ofscreening procedures for identifying therapeutic compounds (e.g.,anti-diabetic and anti-obesity pharmaceuticals or both) which can beused in human patients. In particular examples, compounds that downregulate daf-3 or daf-16 or their human homologs are considered usefulin the invention. Similarly, compounds that up regulate or activatedaf-1, daf-2, daf-4, daf-7, daf-8, daf-1 daf-14, age-1, or akt (or eachof their corresponding human homologs) are also considered useful asdrugs for the treatment of impaired glucose tolerance conditions, suchas diabetes and obesity. In general, the screening methods of theinvention involve screening any number of compounds for therapeuticallyactive agents by employing any number of in vitro or in vivoexperimental systems. Exemplary methods useful for the identification ofsuch compounds are detailed below.

[0395] The methods of the invention simplify the evaluation,identification, and development of active agents for the treatment andprevention of impaired glucose tolerance conditions, such as diabetesand obesity. In general, the screening methods provide a facile meansfor selecting natural product extracts or compounds of interest from alarge population which are further evaluated and condensed to a fewactive and selective materials. Constituents of this pool are thenpurified and evaluated in the methods of the invention to determinetheir anti-diabetic or anti-obesity activities or both.

[0396] Below we describe screening methods for evaluating the efficacyof a compound as anti-diabetic or anti-obesity agents or both. Theseexamples are intended to illustrate, not limit, the scope of the claimedinvention.

[0397] Test Extracts and Compounds

[0398] In general, novel drugs for the treatment of impaired glucosetolerance conditions are identified from large libraries of both naturalproduct or synthetic (or semi-synthetic) extracts or chemical librariesaccording to methods known in the art. Those skilled in the field ofdrug discovery and development will understand that the precise sourceof test extracts or compounds is not critical to the screeningprocedure(s) of the invention. Accordingly, virtually any number ofchemical extracts or compounds can be screened using the exemplarymethods described herein. Examples of such extracts or compoundsinclude, but are not limited to, plant-, fungal-, prokaryotic- oranimal-based extracts, fermentation broths, and synthetic compounds, aswell as modification of existing compounds. Numerous methods are alsoavailable for generating random or directed synthesis (e.g.,semi-synthesis or total synthesis) of any number of chemical compounds,including, but not limited to, saccharide-, lipid-, peptide-, andnucleic acid-based compounds. Synthetic compound libraries arecommercially available from Brandon Associates (Merrimack, N.H.) andAldrich Chemical (Milwaukee, Wis.). Alternatively, libraries of naturalcompounds in the form of bacterial, fungal, plant, and animal extractsare commercially available from a number of sources, including Biotics(Sussex, UK), Xenova (Slough, UK), Harbor Branch Oceangraphics Institute(Ft. Pierce, Fla.), and PharmaMar, U.S.A. (Cambridge, Mass.). Inaddition, natural and synthetically produced libraries are produced, ifdesired, according to methods known in the art, e.g., by standardextraction and fractionation methods. Furthermore, if desired, anylibrary or compound is readily modified using standard chemical,physical, or biochemical methods.

[0399] In addition, those skilled in the art of drug discovery anddevelopment readily understand that methods for dereplication (e.g.,taxonomic dereplication, biological dereplication, and chemicaldereplication, or any combination thereof) or the elimination ofreplicates or repeats of materials already known for their anti-diabeticand anti-obesity activities should be employed whenever possible.

[0400] When a crude extract is found to have anti-diabetic oranti-obesity activities or both, further fractionation of the positivelead extract is necessary to isolate chemical constituents responsiblefor the observed effect. Thus, the goal of the extraction,fractionation, and purification process is the careful characterizationand identification of a chemical entity within the crude extract havinganti-diabetic or anti-obesity activities. The same in vivo and in vitroassays described herein for the detection of activities in mixtures ofcompounds can be used to purify the active component and to testderivatives thereof. Methods of fractionation and purification of suchheterogenous extracts are known in the art. If desired, compounds shownto be useful agents for the treatment of pathogenicity are chemicallymodified according to methods known in the art. Compounds identified asbeing of therapeutic value are subsequently analyzed using any standardanimal model of diabetes or obesity known in the art.

[0401] There now follow examples of high-throughput systems useful forevaluating the efficacy of a molecule or compound in treating (orpreventing) an impaired glucose tolerance condition.

[0402] Nematode Release of Dauer Arrest Bioassays

[0403] To enable mass screening of large quantities of natural products,extracts, or test compounds in an efficient and systematic fashion, C.elegans mutant dauer larvae (e.g., C. elegans containing mutationsdescribed herein, such as C. elegans daf-2 mutant dauer larvae) arecultured in wells of a microtiter plate, facilitating the semiautomationof manipulations and full automation of data collection. In oneparticular example, the assay for dauer release involves a measurementof culture turbidity. Specifically, dauer larvae are treated withcandidate compounds and allowed to incubate. If dauer release occurs,the animals grow and reproduce, and consume their light-scatteringbacterial food source, decreasing the turbidity of the microtiter wellculture. Thus, dauer release is measured by the extent of the decreasein culture turbidity. This type of assay allows millions of microtitersamples to be simultaneously screened.

[0404] As discussed above, compounds that down regulate DAF-3 or DAF-1620 activities or up regulate DAF-1, DAF-2, DAF-4, DAF-7, DAF-8, DAF-11,DAF-14, AGE-1, or AKT activities are considered useful in the invention.Such compounds are identified by their effect on dauer formation in C.elegans strains carrying mutations in these genes (as described above).

[0405] In particular examples, nematodes bearing mutations in the DAF-2polypeptide arrest as dauer larvae, never producing progeny. All of themetabolic and growth arrest phenotypes caused by lack of daf-2 aresuppressed by mutations in daf-16. Mutations in the PI 3-kinase, AGE-1,have the same phenotype as lack of daf-2, and such mutations are alsosuppressed by daf-16 mutations. Biochemical analysis of insulinsignaling in mammals supports the view that AGE-1 transduces signalsfrom the DAF-2 receptor by generating a PIP3 signal. Because daf-16mutations suppress lack of daf-2, or age-1 gene activity, it is believedthat PIP3 down regulates or modifies daf-16 gene activity. Thebiochemical overlap between DAF-2/AGE-1 and insulin receptors/PI3-kinase indicates that the human homolog of the C. elegans daf-16 geneacts in the insulin pathway as well. Thus, the C. elegans insulinsignaling pathway yields the surprising result that the animals can livewithout insulin signaling, provided they are mutant in daf-16. Thisanalysis therefore indicates that a compound that inhibits DAF-16activity would reverse the effects of diabetic lesions, e.g., in theproduction or secretion of insulin or in the reception of insulinsignals by target tissues. Such drugs would be expected to beefficacious in the treatment of insulin deficiencies due to pancreatic βcell destruction in Type I diabetes, as well as some Type II diabetesdue to defects in insulin signaling.

[0406] To evaluate the ability of a test compound or an extract todecrease daf-16 gene activity, mutant daf-2 (e1370); daf-16 (mgDf50)animals carrying an integrated human DAF-16 gene are incubated inmicrotiter dishes in the presence of a test compound. This human DAF-16gene supplies all of the DAF-16 activity in the C. elegans strain andthus allows daf-2-induced dauer arrest unless its activity is decreasedby the candidate test compound. If desired, various concentrations ofthe test compound or extract can be inoculated to assess the dosageeffect. Control wells are incubated in the absence of a test compound orextract. Plates are then incubated at 25° C. After an appropriate periodof time, e.g., 2 to 5 days, wells are examined for progeny. The presenceof progeny is taken as an indication that the test compound or extractis effective at inhibiting daf-3 or daf-16 activity, and therefore isconsidered useful in the invention. Any compound that inhibits DAF-16gene activity (or activates upstream signaling in the absence ofreceptor function) will allow reproduction. This is shown schematicallyin FIG. 19.

[0407] Alternatively, a diabetic condition may arise from defects in theDAF-7 TGF-p signaling pathway. Since a decrease in DAF-3 activitybypasses the need for DAF-7 activity in C. elegans metabolic control,drugs that down regulate DAF-3 activity are useful for ameliorating themetabolic defects associated with diabetes. To screen for such drugs,daf-7 (e1372); daf-3 (mg9O) nematodes expressing human DAF-3 are exposedto chemicals as described above. In this strain, human DAF-3 suppliesall DAF-3 activity, causing daf-7 induced dauer arrest unless itsactivity is inhibited (FIG. 20). Compounds capable of inhibiting thisactivity are considered useful therapeutics in the invention.

[0408] Finally, in a less complex screen for drugs that inhibit C.elegans daf-3 or daf-16, daf-7 or daf-2 mutants are directly screenedfor compounds that decrease C. elegans daf-3 or daf-16 gene activity.

[0409] In addition, C. elegans worms carrying other daf mutations may beutilized in an assay to obtain additional information on the mode ofaction of the test compound in the insulin or TGF-β signaling pathways.For example, a drug having PIP3 agonist activity would be expected toallow age-1 and daf-2 mutants (but not akt or daft7 mutants) to notarrest at the dauer stage. Similarly, drugs that inhibit daf-3 areexpected to suppress daf-7 mutants but not daf-2 or age-1 mutants.

[0410] Exemplary Dauer Recovery Screen

[0411] Using screens such as those described above, muscarinic agonistshave been shown to specifically promote dauer recovery inpheromone-induced dauers as well as particular classes of dauerconstitutive mutants. Strikingly, the muscarinic agonists could notinduce recovery of daf-2 induced dauers, which have defectiveinsulin-like signaling. This muscarinic pathway was also shown toregulate A. caninum recovery from dauer arrest. In mammals, suchmuscarinic agonists promote insulin release both in vivo and in vitro(Ahren et al., (1986) Diabetologia 29:827-836; and Miller (1981) Endocr.Rev. 2:471-494). We suggest that insulin-like secretory cells in thenematodes are regulated by cholinergic inputs in a metabolic controlpathway that is homologous to the mammalian autonomic input topancreatic beta cell activity. Drugs that activate cholinergic as wellas other mammalian insulin release pathways may prove useful in thecontrol of parasitic nematode life cycles. These experiments werecarried out as follows.

[0412] Strains and Growth Conditions

[0413] All strains were maintained and handled as described in Brenner(1974) Genetics 77:71-94; and Sulston and Hodgkin (1988) Methods (ColdSpring Harbor Laboratory, Cold Spring Harbor. Animals were grown onstandard NG agar plates. In this study, the mutations in C. elegans usedwere LGI: daf-8(e1393); LGII: daf-22(m130); LGIII: daf-7(e1372),daf-2(e1370), daf-4(m63); and LGIV: daf-1(m40), daf-14(m77),daf-10(e1387); LGX: daf-12(m20). Ancylostoma caninum were maintained asdescribed previously (Hawdon and Schad (1993) Exper. Parasitol.77:489-491).

[0414] Dauer Arrest Assay Minimal media plates were used for the drugassays: 3.0 g NaCl, 20 g agarose (Sigma-Type II #A6877) and 970 ml ofwater. The autoclaved solution was cooled to 50-55° C. before 25 ml of1M KPO₄ (pH 6.0), 1.0 ml 1M CaCl₂, 1.0 ml of 1M MgSO₄, and 1 ml of 5mg/ml cholesterol were added. In some assays, Escherichia coli (DH5α)bacteria arrested with streptomycin was added to each plate.

[0415] Animals were grown at 15° C. for several generations and thenwere placed in a bleach solution to isolate eggs. 100-200 eggs wereadded to each 10 ml drug plate with food. In several assays, eggs wereplaced in 5-6 ml of S medium (Wood (1988) (Cold Spring Harbor LaboratoryPress, Cold Spring Harbor, N.Y.)) in a 15 ml polypropylene tube on arotary platform at 25° C. overnight for 12-16 hours without food. Thisyields a synchronous preparation of L1 animals. The synchronized L1swere placed onto the drug plates at 20° C. Two, four, and eight dayslater, plates were examined for the presence of arrested dauers andreproductive non-dauers. When the non-dauers had reached the gravidadult hermaphrodite stage and were beginning to lay eggs, each plate wasexamined visually for the presence of dauers and non-dauers. Followingthis, animals from each plate were rinsed off the plate into a plasticdish containing 1% SDS (dauers are the only larval stage resistant tothis treatment). After 30 minutes, dishes were examined under thedissecting microscope for the presence of dauers and non-dauers.

[0416] Dauer Recovery Assay

[0417] We found that the most effective assay for dauer recovery was toplace dauer stage animals onto drug plates at 25° C. without theaddition of food. In some experiments, 100-200 eggs or synchronized L1swere put onto the drug plates. For all experiments described herein,about 10,000 L1s were placed in 10 ml of S Medium containing 1-2 ml of a0.4% (w/v) solution of Escherichia coli DH5a bacteria in M9 solution(Wood (1988) (Cold Spring Harbor Laboratory Press, Cold Spring Harbor,N.Y.)) arrested with streptomycin, in a 25 ml flask on a rotating heatedwater bath at 25° C. For wild-type N2 dauers, 600 μl of the 0.4%bacterial solution and pheromone was also added to flask as described inGottlieb and Ruvkun (1994) Genetics 137:107120. The pheromonepreparation is a solution prepared as follows. Animals were grown in alarge flask for several generations, and then spun down. The supernatantwas boiled down to a brownish powder and then ethanol extracted. After72 hours of liquid growth, animals were centrifuged and the supernatantremoved. Animals were then resuspended in a 15 ml tube with a pre-heated25° C. solution of 1% SDS and tubes were placed on a rocker at 25° C.for 30 minutes. Animals were centrifuged and the SDS removed. Animalswere washed with either M9 or S medium (Wood (1988) (Cold Spring HarborLaboratory Press, Cold Spring Harbor, N.Y.)) 4-6 times. After a finalspin, 100-200 dauers were placed onto the drug plates without food. 24and 48 hours later, plates were scored for the number of dauers andnon-dauer adults.

[0418] For each strain tested, a control plate without any drug, withand without food was also tested. With no drug, there was 40% recoveryin N2 dauers. The high value for the control plate in N2 may have beendue to experimental procedure. The background recovery rate for N2 wasmuch higher than the background recovery rate for the dauer constitutivemutants where there was very little, if any, background recovery. Theassay was performed at 25° C., which means that the daf-c mutants arestill under full dauer inducing conditions. However, for N2, noexogenous pheromone was added to the drug plate and therefore, eventhough the plates were kept at a high temperature and had no food,dauer-maintaining conditions may not have been as severe as for thedaf-c mutants.

[0419] Drug Assay in A. caninum

[0420] Hookworm infective L3 animals were collected from 1-4 wk oldcoproculture by the Baermann technique, and decontaminated with 1% HCLin BU buffer (50 mM Na2PO4/22 mM KH2PO4/70 mM NaCl, pH 6.8) (Hawdon andSchad (1991) in Developmental Adaptations in Nematodes., ed. C. A. Toft,A. A. a. L. B. (Oxford University Press, Oxford), pp. 274-298; andHawdon and Schad (1991) J. Helm. Soc. Wash. 58:140-142) for 30 minutesat 22° C. Approximately 250 L3 animals were incubated in individualwells of a 96-well tissue culture plate containing 0.1 ml RPMI1640tissue culture medium, supplemented with 0.25 mM HEPES pH 7.2, 100 U/mlpenicillin, 100 μg/ml streptomycin, 100 μg/ml gentamycin, and 2.5 μg/mlamphotericin B. The L3 animals were activated to resume development andfeeding by including 10% (v/v) canine serum and 25 mMS-methyl-glutathione (GSM; Hawdon et al. (1995) Exper. Parasitol.80:205-211). Non-activated L3 animals were incubated in RPMI alone(i.e., without the stimulus). Stock solutions of the drugs were made inPMI, and included in the incubation at the indicated concentrations. Thegonists were tested for activation by incubation with the L3 animals inthe absence of the normal stimulus (i.e., serum+GSM), whereas atropinewas tested in the presence of the normal stimulus, as well as with theagonists. The L3 animals were incubated at 37° C. 5% CO₂ for 24 hours.The percentage of feeding L3 animals was determined by incubating the L3animals with 2.5 mg/ml FITC-BSA for 2-3 hours, followed by counting thenumber of L3 animals that had ingested the labeled BSA by microscopicexamination under epi-fluorescent illumination (Hawdon and Schad (1990)J. Parasit. 76:394-398). Each treatment was done in triplicate, and eachexperiment was repeated at least once.

[0421] Neurotransmitter Regulation of Diapause

[0422] Dauer arrest is modulated by sensory inputs (Golden and Riddle(1984) Developmental Biology 102:368-378). Arrest at the dauer stage iscontrolled by parallel TGF-β and insulin-like signaling pathways (Riddle(1988) in The Nematode Caenorhabditis elegans, ed. Wood, W. B. (ColdSpring Harbor Laboratory Press, Cold Spring Harbor, N.Y.), pp.393-412;Riddle and Albert (1997) in C. elegans II, eds. Riddle, D. L.,Blumenthal, T., Meyer, B. J. & Priess, J. R. (Cold Spring HarborLaboratory Press), pp. 739-768; Thomas (1993) Bioessays 15:791-797;Riddle et al. (1981) Nature 290:668-671; Vowels and Thomas (1992)Genetics 130:105-123; Thomas et al. (1993) Genetics 134:1105-1117;Gottlieb and Ruvkun (1994) Genetics 137:107120; Georgi et al. (1990)Cell 61:635-645; Estevez et al. (1993) Nature 365:644-649; Ren et al.(1996) Science 274:1389-1391; Kimura et al. (1997) Science 277:942-946;and Morris et al. (1996) Nature 382:536-539.41). Animals arrest at thedauer stage when they are lacking signaling from either of these twopathways (Georgi et al. (1990) Cell 61:635-645; Estevez et al. (1993)Nature 365:644-649; Ren et al. (1996) Science 274:1389-1391; Kimura etal. (1997) Science 277:942-946; and Morris et al. (1996) Nature382:536-539.41). Animals will arrest development at the dauer stage whenhigh levels of pheromone result in the absence of both the DAF-7/TGF-βligand which is secreted from the ASI sensory neuron as well as an asyet unidentified secretory cell that releases the insulin-like ligand.Lack of the TGF-β ligand results in an upregulation of the DAF-3 Smadprotein, while lack of the insulin-like ligand causes an upregulation ofthe DAF-16 forkhead transcription factor. Therefore, for dauer arrest,two separate signaling pathways are involved. Recovery from the dauerarrest when pheromone levels decline is thought to involve up-regulationof these TGF-β and insulin-like signals.

[0423] To detect possible neural inputs to this neuroendocrine system,we tested drugs that affect a variety of neurotransmitter signalingpathways, including agonists, antagonists, and reuptake inhibitors, foreffects on either dauer arrest or dauer recovery. We have shown thatmuscarinic agonists (oxotremorine, arecoline, pilocarpine and muscarine)promoted dauer recovery. None of the drugs tested promoted dauer arrestunder replete conditions.

[0424] Cholinergic Input to Dauer Recovery

[0425] We tested drugs that affected the following mammalian neuronalpathways: adrenergic/noradrenergic, serotonergic, cholinergic,glutaminergic, dopaminergic, gabaergic and opiod for effects on C.elegans dauer induction and dauer recovery. In each category bothagonists and antagonists were examined. Most drugs tested did not affectdauer recovery and the animals remained arrested at the dauer stage.However, multiple unrelated muscarinic agonists could promote dauerrecovery. Four muscarinic agonists, oxotremorine, pilocarpine,arecoline, and carbachol (Avery et al. (1993) Genetics 134:455-464),promoted recovery of dauers induced by mutation as well as pheromone.The dose response curves in FIGS. 44A-44C show the muscarinic agonistsinduced about 50% recovery of dauers induced by defective TGF-βsignaling in the daf-7(e1372) mutant, with a defect in the TGF-β ligand.Similar results were seen with other mutants in the TGF-13 signalingpathway, daf-1(m40) in the type I TGF-β receptor and daf-4(m63) in thetype II TGF-β receptor. For example, 30% of daf-1(m40) dauers recover inoxotremorine, whereas plates with no drug had less than 5% recovery.Similarly, 50% of daf-4(m63) dauers recover in oxotremorine, whileplates with no drug had less than 1% recovery.

[0426] The infective “dauer” L3 of the hookworm A. caninum can bestimulated to resume feeding and development in vitro by incubation withcanine serum and S-methyl-glutathione (GSM), but not by tissue culturemedium alone (Sulston and Hodgkin (1988) Methods (Cold Spring HarborLaboratory, Cold Spring Harbor)). However, when A. caninum L3 wereincubated with either oxotremorine or arecoline in the tissue culturemedium, 60-80% of the animals recovered, as indicated by the resumptionof feeding. Therefore, muscarinic agonists mimicked the recovery inducedby serum and GSM.

[0427] FIGS. 44A-44C show the dose response curves of two of themuscarinic agonists tested: oxotremorine and arecoline. In each figurewe show the dose response for wild-type induced dauers, daf-7(e1372),daf-2(e1370) and A. caninum dauers. Pilocarpine (data not shown) andoxotremorine (FIG. 44A) induced maximum recovery of daf-7(e1372) dauersat 5 mM concentration, while wild-type pheromone-induced dauers reachedmaximum recovery at 1 mM. A. caninum L3 dauers also reached maximumrecovery at 5 mM oxotremorine (FIG. 44A), but failed to recover whenincubated with pilocarpine. The maximal response for arecoline was 10fold lower than for the other agonists in both C. elegans and A. caninum(FIG. 44B). Concentrations of 1 mM to 5 mM of a drug are routinely usedin drug assays in C. elegans (Hart et al. (1995) Nature 378:82-85.21;Horvitz et al. (1982) Science 216:1012-1014; Lewis et al. (1980)Genetics 95:905-928; Lewis et al. (1980) Neuroscience 5:967-989; Maricqet al. (1995) Nature 378:78-81; McIntire et al. (1993) Nature364:334-337; McIntire et al. (1993) Nature 364:337-341; Schinkmann andLi (1992) J. Comp. Neurol. 316:251-260.51; and Avery et al. (1993)Genetics 134:455-464). The unusually high doses may be due to a cuticlepermeability barrier.

[0428] While the muscarinic agonists were potent inducers of recovery indaf-7 induced and pheromone-induced dauers, they did not induce recoveryof a daf-2 mutant with defects in the C. elegans homologue of themammalian insulin receptor gene (FIG. 44A-44C). Thus the muscarinicrecovery pathway depends on insulin-like signaling. Atropinespecifically inhibits dauer recovery

[0429] To determine the specificity of the muscarinic response, we addedboth oxotremorine, the agonist, and atropine, a muscarinic antagonist,to plates varying the concentration of antagonist to obtain a doseresponse shown in FIG. 44C. In 1 mM oxotremorine, 40% of thedaf-7(e1372) dauers recovered. However, in combination with 1 mMatropine, 1 mM oxotremorine only induced 5% recovery; at 5 mM atropine,the 1 mM oxotremorine response was completely abolished. For wild-typeN2 dauers, the results were almost identical (FIG. 44C). This suggestedthat the drug-induced recovery was a specific muscarinic response, sincein mammals atropine is only a muscarinic antagonist and did notinterfere with nicotinic receptors (Lefkowitz et al. (1996) in Goodmanand Gilman's The Pharmacological Basis of Therapeutics, eds. Hardman, J.G. & Limbird, L. E., McGraw Hill, pp. 105-139; and Brown and Taylor(1996) in Goodman and Gilman's The Pharmacological Basis ofTherapeutics, eds. Hardman, J. G. & Limbrid, L. E., McGraw Hill, pp.141-160).

[0430] Atropine (0.5 mM) inhibited recovery of A. caninum L3 incubatedwith serum and GSM by 99.5%. Moreover, A. caninum L3 incubated with 0.5mM arecoline and 1.0 mM atropine failed to recover (FIG. 44C). Thesedata indicate that recovery from arrest in hookworm L3 is also mediatedby a muscarinic signal.

[0431] Atropine inhibits C. elegans dauer recovery induced by foodsignals. When killed bacteria are added to pheromone-induced dauers at25° C., 99% of the animals recovered (FIG. 45A). Without bacteria, nodauers recovered in the same time period (FIG. 45A). However, only 21%of the dauer larvae recovered in bacterial food plus atropine (FIG.45A). Similarly, atropine (0.5 mM) inhibited recovery of A. caninum L3incubated with serum and GSM by 99.5%.

[0432] Temperature is a potent inducer of dauer recovery in animalsbearing mutations in the TGF-β or insulin-like signaling pathways. Forexample, null mutations in daf-7 are temperature sensitive, and recoveryof both daf-7 and daf-2-induced dauer larvae was stimulated by shift to15° C. (FIG. 45A). Temperature downshift in the absence of food did notinduce dauer recovery in either daf-7 or daf-2 mutants (FIG. 45A) nordid bacterial food at 25° C. allow non dauer development. However,temperature downshift and addition of food induced more than 75%recovery of both mutants. This recovery in both daf-7 and daf-2 mutantswas inhibited by atropine (FIGS. 45A-45B).

[0433] We tested whether it was necessary to have functioning sensoryneurons to mediate the muscarinic induced response. daf-10 mutants haveabnormal mechanocilia and irregular contours in the amphid sensilla. Adaf-7(e1372); daf-10(e1387) double mutant gave a maximum response of 13%recovery with 1 mM oxotremorine. This suggests that the amphid neuronsare necessary to meditate the muscarinic response. Alternatively, it ispossible that the amphid defects do not allow the drug to enter theworm, if the drug indeed does penetrate the worm through these neurons.

[0434] We also examined whether exogenous application ofneurotransmitters could mimic the dauer pheromone to induce dauerarrest. We tested these drugs for induction of dauer arrest in wild-typeand daf-22 mutants. daf-22 is a mutant that does not secrete pheromone,but will arrest at the dauer stage when exposed to exogenous pheromone(Golden and Riddle (1985) Molecular and General Genetics 198:534-536).None of the drugs tested caused dauer entry under favorable growthconditions. The drugs were active in the plate because several of thedrugs caused either paralysis, death, or egg-laying defects.

[0435] Dauer Recovery by Muscarinic Agonists

[0436] Arrest at the dauer stage is a nematode survival strategy that isa specific example of the related and phyletically general diapausearrest. In C. elegans, dauer arrest occurs under harsh environmentalconditions whereas in the hookworm, A. caninum, a parasitic nematode,diapause is a non-conditional stage in the life cycle (Riddle and Bird(1985) J. Nematol. 17:165-168; and Schmidt and Roberts (1985)Foundations of Parasitology (Times Mirros/Mosby College Publishing)).Dauer recovery is regulated by levels of pheromone, food, andtemperature in C. elegans, whereas in A. caninum unknown host factorsinduce dauer recovery upon infection (Golden and Riddle (1984)Developmental Biology 102:368-378).

[0437] We have shown that muscarinic agonists cause dauer recovery inboth C. elegans and A. caninum, and that this recovery is specificallyinhibited by the muscarinic antagonist atropine. The endogenousneurotransmitter at muscarinic receptors is acetylcholine, which invertebrates functions at cholinergic synapses in both the peripheral andcentral nervous system (Brown and Taylor (1996) in Goodman and Gilman'sThe Pharmacological Basis of Therapeutics, eds. Hardman, J. G. &Limbird, L. E., McGraw Hill, pp. 141-160). Acetylcholine has a widevariety of functions in vertebrate signaling including sympathetic andparasympathetic ganglion cells as well as the adrenal medulla, synapseswithin the central nervous system, and motor end plates on skeletalmuscle innervated by somatic motoneurons (Brown and Taylor (1996) inGoodman and Gilman's The Pharmacological Basis of Therapeutics, eds.Hardman, J. G. & Limbird, L. E., McGraw Hill, pp. 141-160). Muscarinicreceptors are found in muscle, the autonomic ganglia, the centralnervous system and secretory glands. These receptors couple to Gproteins and signal on longer time scales than nicotinic receptors.Signaling can be either excitatory or inhibitory (Lefkowitz et al.(1996) in Goodman and Gilman's The Pharmacological Basis ofTherapeutics, eds. Hardman, J. G. & Limbird, L. E., McGraw Hill, pp.105-139). Both muscarinic and nicotinic receptors have been found ininvertebrates such as Drosophila and C. elegans as well as vertebrates(Lewis et al. (1980) Genetics 95:905-928; Dudai and Ben-Barak (1977)FEBS Lett. 81:134-136; Haim et al. (1979) J. Neurochem. 32:543-522; andCulotti and Klein (1983) J. Neurosci. 3:359-368).

[0438] The nicotinic receptor has been the primary focus of the studieson cholinergic signaling in the worm. The drug levamisole, a nicotinicagonist, is toxic to animals, causing muscle hypercontraction (Lewis etal. (1980) Genetics 95:905-928; and Lewis et al. (1980) Neuroscience5:967-989). Mutants that are resistant to this drug have revealedcomponents of a nicotinic signaling cascade (Lewis et al. (1980)Genetics 95:905-928; and Lewis et al. (1980) Neuroscience 5:967-989).Levamisole has no effect on dauer recovery, suggesting that thenicotinic receptor pathway does not regulate dauer arrest.

[0439] Fewer studies, however, have been done on muscarinic signaling inC. elegans. Binding studies on crude homogenates of C. elegans haveshown that they contain muscarinic receptors that have the potential tobind to the muscarinic ligands, [3H] QNB (Yamamura & Snyder (1974) Proc.Natl. Acad. Sci. ? :1725-1729) and [3H] N-methylscopalamine(Burgermeister et al. (1978) Mol. Pharmacol. 14:240-256) with highaffinity (Culotti and Klein (1983) J. Neurosci. 3:359-368). Thesereceptors were found in both C. elegans adults and L1 and L2 larvae((Culotti and Klein (1983) J. Neurosci. 3:359-368). Several potentialmuscarinic receptor homologues have been identified in the C. elegansgenome sequence database (Sulston et al. (1992) Nature 356:37-41)

[0440] There are two different classes of muscarinic receptor agonists:choline esters and cholinomimetic allkaloids. Both arecoline andpilocarpine are naturally occurring drugs from the betel nut seed andthe Pilocarpus leaf, respectively, while oxotremorine is a syntheticdrug (Brown and Taylor (1996) in Goodman and Gilman's ThePharmacological Basis of Therapeutics, eds. Hardman, J. G. & Limbird, L.E., McGraw Hill, pp. 141-160). Carbachol is a synthetic choline esterwhich mimics acetylcholine and acts at both muscarinic and nicotinicreceptors in mammals (Brown and Taylor (1996) in Goodman and Gilman'sThe Pharmacological Basis of Therapeutics, eds. Hardman, J. G. &Limbird, L. E., McGraw Hill, pp. 141-160). Arecoline, pilocarpine, andoxotremorine are drugs that have the same sites of action and functionas the choline esters (Brown and Taylor (1996) in Goodman and Gilman'sThe Pharmacological Basis of Therapeutics, eds. Hardman, J. G. &Limbird, L. E., McGraw Hill, pp. 141-160). Arecoline also acts onnicotinic receptors. Atropine specifically inhibits mammalian muscarinicresponses (Brown and Taylor (1996) in Goodman and Gilman's ThePharmacological Basis of Therapeutics, eds. Hardman, J. G. & Limbird, L.E., McGraw Hill, pp. 141-160). Since all of the drug-induced dauerrecovery was inhibited by atropine, we concluded that this response wasmediated by muscarinic signaling.

[0441] Molecular analysis of the dauer mutants revealed that a TGF-βsignaling pathway regulated dauer arrest (FIG. 46). Mutations in daft7,which encodes a TGF-B ligand, caused animals to arrest at the dauerstage even under favorable growth conditions (Ren et al. (1996) Science274:1389-1391). The same phenotype was observed in animals bearing amutation in either of the two TGF-β receptors, daft] and daf-4 (Georgiet al. (1990) Cell 61:635-645; and Estevez et al. (1993) Nature365:644-649; FIG. 46). Downstream of the receptors are members of theSmad signaling group including the genes daf-8, daft]4 and daf-3 (FIG.46). Muscarinic agonists potently induced recovery of dauer larvaeinduced by mutations in this group of genes (FIG. 44A-44C).

[0442] An insulin-like signaling pathway represented by daf-2 and age-1functions in parallel to this TGF-β pathway (Riddle et al. (1981) Nature290:668-671; Vowels and Thomas (1992) Genetics 130:105-123; Thomas etal. (1993) Genetics 134:1105-1117; Gottlieb and Ruvkun (1994) Genetics137:107120; Kimura et al. (1997) Science 277:942-946; and Morris et al.(1996) Nature 382:536-539.41; FIG. 46). daf-2 is a member of the insulinreceptor family (Kimura et al. (1997) Science 277:942-946) and age-1encodes phosphatidylinositol (PI)-3- kinase (Morris et al. (1996) Nature382:536-539.41) suggesting that the level of an insulin-like molecule isdown-regulated during pheromone-induced dauer arrest. None of the drugstested, including the muscarinic agonists and antagonists, could inducedauer recovery in daf-2 mutants (FIG. 44A-44C). Thus the cholinergicinput to dauer recovery depends on insulin-like signaling. We suggestthat muscarinic agonists induce recovery of the TGF-β pathway mutantdauer larvae or pheromone-induced dauer larvae by stimulating signalingin the daf-2 insulin-like pathway. In this way, cholinergic stimulationcan induce recovery in animals with defective TGF-β pathway genes butnot in animals with defect insulin-like pathway genes.

[0443] In vertebrate insulin signaling, many studies link muscarinic andinsulin signaling pathways. Both adrenergic and cholinergic fibersinnervate secretory cells in the vertebrate islet of Langerhans (Ahrenet al. (1986) Diabetologia 29:827-836; and Yamamura and Snyder (1974)Proc. Natl. Acad. Sci.1725-1729). Consistent with the suggestion thatmuscarinic inputs increase C. elegans insulin-like signaling, mammalianautonomic cholinergic fibers enhance insulin secretion. Pharmacologicalstimulation with acetylcholine or carbachol can induce insulin releaseboth in vivo and in vitro. This induction is completely abolished byatropine, showing that it is mediated by activation of muscarinicreceptors on the β cells (Ahren et al. (1986) Diabetologia 29:827-836;Boschero et al. (1995) Am. J. Physiol. 268:E336-E342; and Latifpour etal. (1992) J. Urol. 147:760-763). In mammalian systems, binding ofacetylcholine to the β cell muscarinic receptor causes activation ofsodium channels, which in turn leads to a change in membrane potentialto induce insulin.

[0444] These data suggest the model shown in FIG. 46 for dauer recoveryin C. elegans. When pheromone levels decrease and food levels increase,acetylcholine is secreted from an as yet unidentified neuron and bindsto the muscarinic receptor on an insulin-like secreting neuron or othercell. This induces secretion of an insulin-like signal to in turn inducedauer recovery (FIG. 46). The lack of muscarinic induced dauer recoveryin daf-2 mutants suggest that the insulin-like dauer recovery signalacts via the DAF-2 receptor homologue. From analogy with the vertebratestudies, we suggest that a muscarinic signal causes an increase ininsulin release that would bind to the DAF-2 receptor and activatedownstream genes which promote dauer recovery. We suggest that theinsulin-like DAF-2 ligand is produced by neurons just as the DAF-7 TGF-βsignal is produced by the ASI sensory/secretory neuron. Insulinsecreting pancreatic β-cells have many neuronal features and are thoughtto be specialized “ganglia” related to the enteric nervous system oflower vertebrates. In addition, proteins related to insulin are producedby metabolism regulating neurons in Limulus. Distant relatives ofinsulin are found in the C. elegans genome database. We suggest that thesecretory cells that express such an insulin-like gene will also expressmuscarinic receptors and be connected to food, pheromone, andtemperature sensory neurons.

[0445] Temperature acts as a modulator for dauer recovery (Riddle andAlbert (1997) in C. elegans II, eds. Riddle, D. L., Blumenthal, T.,Meyer, B. J. & Priess, J. R., Cold Spring Harbor Laboratory Press, pp.739-768, FIGS. 45A-B). The thermoregulatory circuit for temperaturesensation and output of that information to motor and endocrine pathwayshas been identified (Hobert et al. (1997) Neuron 19:345-357). Thispathway consists of the thermosensory neuron AFD coupled to theintemeurons AIY and AIZ (Hobert et al. (1997) Neuron 19:345-357; andHenquin (1994) in Joslin's Diabetes Mellitus, eds. Kahn, C. R. & Weir,G. C., (Lea & Febiger, pp. 56-80)). Mutations in the gene ttx-3, whichaffect AIY function and is expressed exclusively in the AIY interneurons(Hobert et al. (1997) Neuron 19:345-357), decouple this thermoregulatorypathway from the dauer pathway: daf-7; ttx-3 double mutant animals formdauers that recover at high temperature, unlike daf-7 single mutants(Hobert et al. (1997) Neuron 19:345-357). However, daf-2;ttx-3 doublemutant dauers do not recover at high temperature, like the daf-2 mutantalone. We suggest that thermosensory signals through thethermoregulatory AIY and AIZ intemeurons couple via as yet unidentifiedinsulin-like secretory neurons (FIG. 46). Given that rates of growth andmetabolism are intimately connected to cultivation temperature ininvertebrates, the coupling of thermosensation to metabolic control isreasonable. Such a coupling of thermosensory input to metabolic controlby the daf-2 insulin-like signaling pathway is analogous to thehypothalamic modulation of autonomic input to the pancreatic beta cells.

[0446] The muscarinic signaling pathway also acts in recovery ofhookworm infective L3 from their arrested “dauer” state. Recovery fromdauer arrest in hookworm occurs in the definitive host in response to anundefined host-specific signal. We suggest that upregulation of aninsulin-like molecule by a cholinergic pathway also causes dauerrecovery upon entry into the host in A. caninum. Accordingly, suchparasite insulin-like signals provide targets for anti-helminthic drugs.For example, known muscarinic signaling drugs may constitute novelchemotherapeutic strategies to perturb the dauer maintainence process ininvertebrate hosts as well as the recovery process in human hosts.

[0447] Other Screening Assays

[0448] Other drug screening assays may also be performed using either C.elegans worms or mammalian cell cultures. If desired, such assays mayinclude the use of reporter gene constructs.

[0449] For example, evaluation of the effects of test compounds on dauerformation or reporter gene expression in mutant C. elegans strainsexpressing particular human homologs of the daf age, or akt genes (i.e.,humanized C. elegans) represent useful screening methods. Expression ofthe human homologs in C. elegans is accomplished according to standardmethods and, if desired, such genes may be operatively linked to a genepromoter obtained from C. elegans. Such promoters include, withoutlimitation, the C. elegans daf-16, age-1, daf-3, daf-4, and akt genepromoters. For example, the 2.5 kb age-1 promoter can be generated andisolated by employing standard PCR methods using the following primers:5′GGAAATATTTTAGGCCAGATGCG3′ (SEQ IS NO: 49) and 5°C.GGACAGTCCTGAATACACC3′ (SEQ ID NO: 50).

[0450] Additionally, mammalian tissue culture cells expressing C.elegans daf; age-1, or akt homologs may be used to evaluate the abilityof a test compound or extract to modulate the insulin or TGF-β signalingpathways. Because the signaling pathways from the ligands, receptors,kinase cascades, and downstream transcription factors are conserved fromman to worm, test compounds or extracts that inhibit or activate theworm signaling proteins should also inhibit or activate their respectivehuman homolog. For example, our identification that DAF-16 is atranscription factor that acts downstream of insulin-like signaling inC. elegans indicates that human DAF-16 transcription reporter genes alsocan be used to identify drugs that inhibit any of the kinases in thesignaling pathway downstream of insulin signaling. For example, the useof DAF-16 and DAF-3 protein binding sites in reporter gene constructsmay be used to monitor insulin signaling. Candidate compounds mimickinginsulin signaling (e.g., PIP3 agonists) are expected to increasereporter gene expression and are considered useful in the invention.

[0451] Reporter Gene Construct

[0452] In one particular example, the invention involves the use of areporter gene that is expressed under the control of a C. elegans genepromoter, e.g., a promoter that includes theTCTCGTTGTTTGCCGTCGGATGTCTGCC (SEQ ID NO: 51) enhancer element, such asthe C. elegans pharyngeal myosin promoter (Okkema and Fire, Development120: 2175-2186, 1994). This enhancer element is known to respond toDAF-3 regulation (i.e., in daf-7 mutants, where daf-3 is active, theelement confers low level expression to reporter genes; whereas in adaf-7; daf-3 mutant (for example, daf-7 (e1372); daf-3), the elementconfers low level expression to reporter genes). Other equivalentenhancer elements may also be used in the invention, e.g., the enhancerelement which is bound by the Xenopus Smad1 and Fast1 forkhead proteins(Nature 383 600-608, 1996). The enhancer element is cloned upstream ofany standard reporter gene, e.g., the luciferase or green fluorescentprotein (GFP) reporter genes. In preferred embodiments, the GFP reportergene is used in C. elegans. In other preferred embodiments, either theGFP or the luciferase reporter genes may be used in a mammalian cellbased assay. The reporter gene construct is subsequently introduced intoan appropriate host (e.g., C. elegans or a mammalian cell) according toany standard method known in the art. Analysis of reporter gene activityin the host organism or cell is determined according to any standardmethod, e.g., those methods described herein. Such reporter gene (andhost cell systems) are useful for screening for drugs that modulateinsulin or DAF-7 metabolic control signaling.

[0453] In addition, any number of other transcriptional fusions to fatbased metabolic genes, such as fatty acid synthase, hormone sensitivelipase orthologue, and acetyl coa synthase, may also be constructed.These genes are expected to be Up regulated when the animals shift tofat based metabolism and to be directly regulated by DAF-16 and DAF-3,and perhaps DAF-12.

[0454] Transcriptional fusions to GFP allow the screening of drugs ormutants for altered regulation of these genes and altered metabolism.Such drugs or gene targets are useful in the control of obesity anddiabetes. For example, drugs that inactivate the expression of fatsynthesis genes in C. elegans may be used to treat diabetes and obesity.Similarly, full length protein fusions of these genes to GFP reveal thesubcellular localization of the proteins. Drugs or mutants that perturbthe cell biology of these proteins also provide useful treatments anddrug targets for obesity control as well as diabetes.

[0455] Shown below are conserved protein regions of C. eleganshomologues of key metabolic enzymes SEQ ID NOS: 211-363). GFP fusionsmay be constructed using the 5′ promoter regions located between theseconserved protein domains and the next gene located 5′ to these regions,as described above for the glucose transporter GFP fusion gene.Pepck >R11A5 Length = 26,671 Plus Strand HSPs: Score = 994 (461.5 bits),Expect = 0.0, Sun P (5) = 0.0 Identities = 176/223 (78%), Positives= 195/223 (87%), Frame = +1 Query: 201AKNNGEFVRCVHSVGQPKPVATKVINHWPCNPEKTIIABRPAEREIWSFGSGYGGNSLLG 260A  N +FVRC+HSVG P+PV  +VINGWPCNPE+ +IAHRP EREIWSFGSGYGGNSLLG Sbjct: 8682ALGNQDFVRCIHSVGLPRPVKQRVINHWPCNPERVLIAHRPPEREIWSFGSGYGGNSLLG 18861Query: 261 KKCFALRIANNIGYDEGWMAEHMLIMGVTSPKGEERFVAAAFPSACGKTNLAMLEPTIPG320 KKCFALRIA NI  DEGWNAEHMLIMGVT P G E F+AAAFPSACGKTNLAMLEPT+PG Sbjct:18862 KKCFALRIASNIAKDEGWMAEHMLIMGVTRPCGREHFIAAAFPSACGKTNLAMLEPTLPG 19041Query: 321 WKVRVIGDDIAWNKFGADGRLYAINPEYGFFGVAPGTSHKTNPNAMASFQENTIFTNVAE380 WKVR +GDDIAWMKFG DGRLYAINPE GFFGVAPGTS+KTNPMA+A+FQ+N+IFTNVAE Sbjct:19042 WKVRCVGDDIAWMKFGEDGRLYAINPEAGFFGVAPGTSNKTNPMAVATFQKNSIFTNVAE 19221Query: 381 TADGEYFWEGLEHEVKNPKVDMINWLGEPWHIGDESKAAHPNS  423TA+GEYFWEGLE E+ +  VD+  WLGE WHIG+   AAHPNS Sbjct: 19222TANGEYFNEGLEDEIADKNVDITTWLGEKWHIGEPGVAAEPNS  19350 Score = 657 (305.1bits), Expect = 0.0, Sun P (5) = 0.0 Identities = 120/173 (69%),Positives = 144/173 (83%), Frame = +1 Query: 32KGDFVSLPKNVQRFVAEKAELMKPSAIFICDGSQNEADELIARCVERGVLVPLKAYKNNY 91+GDF  LP  VQRF+AEKAELM+P  IFICDGSQ+EADELI + +ERG+L  L+AY+NNY Sbjct:18181 QGDFHLLPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNY 18360Query: 92 LCRTDPRDVARVESKTWMITPEKYDSVCHTPEGVKPMMGQWMSPDEFGKELDDRFPGCMA151 +CRTDP+DVARVESKTWM+T  KYD+V HT EGV+P+MG W++P++   ELD RFPGCMA Sbjct:18361 ICRTDPKDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCMA 18540Query: 152 GRTMYVIPYSMGPVGGPLSKIGIELTDSDYVVLCMRIMTRMGEPVLKALAKNN  204GR MYVIP+SMGPVCGPLSKIGI+LTDS+YVVL MRIMTR+   V  AL   + Sbjct: 18541GRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSMRIMTRVNNDVWDALGNQD  18699 Score = 453(210.3 bits), Expect = 0.0, Sum P (5) = 0.0 Identities = 77/107 (71%),Positives = 90/107 (84%), Frame = +1 Query: 424RFTAPAGQCPIIHPDWEKPEGVPIDAIIFGGRRPEGVPLVFESRSWVHGIFVGACVKSEA 483RF APA QCPIIHPDWE P+GVPI+AIIFCCRRP+GVPL++E+ SW HG+F G+C+KSEA Sbjct:19396 RFAAPANQCPIIHPDWESPQGVPIEAIIFGGRRPQCVPLIYETNSWEHGVFTGSCLKSEA 19575Query: 484 TAAAEHTGKQVMHDPMANRPFMGYNFGRYMRHWMKLGQPPHKVPKIF  530TAAAE TGK VMHDPMANRPFMGYNFG+Y++HW+ L     KV+++F Sbict: 19576TAAAEFTGKTVMHDPMAMRPFMGYNFGKYLQHWLDLKTDSRKVIDFF  19716 Score = 404(187.6 bits), Expect = 0.0, Sum P (5) = 0.0 Identities = 68/116 (58%),Positives = 89/116 (76%), Frame = +1 Query: 526VPKIFHVNWFRQSADHKFLWPGYGDNIRVIDWILRRCSGDATIAEETPIGFIPKKGTINL 585+PKI+HVNWFR+ +++KFLWPG+GDNIRVIDWI+RR  G+  I  ETPIG +P KC+INL Sbjct:19760 MPKIYHVNWFRKDSNNKFLWPGFGDNIRVIDWIIRRLDGEQEIGVETPICTVPAKGSINL 19929Query: 586 EGLPNVNWDELMSIPKSYWLEDMVETKTFFENQVGSDLPPEIAKELEAQTERIKAL 641EGL  VNWDELMS+P  YW +D  E + F + QVG DLP  +  E++AQ +R++ L Sbjct: 19930EGLGEVNWDELMSVPADYWKQDAQEIRKFLDEQVGEDLPEPVRAEMDAQEKRVQTL 20097 Score= 69 (32.0 bits), Expect = 0.0, Sum P (5) = 0.0 Identities = 15/36(41%), Positives = 21/36 (58%), Frame = +1 Query: 5SLSHFKDDDFAVVSEVVTHKQNHIPVIKGDFVSLPK 40SL    +D F VV+EVV  +  H+P++K  F S  K Sbjct: 14722SLRQISEDAFYVVNEVVMKRLGHVPILKVIFESSEK 14829 Score = 39 (18.1 bits),Expect = 6.9e−244, Sum P (4) = 6.9e−244 Identities = 9/25 (36%),Positives = 11/25 (44%), Frame = +3 Query: 148 GCMAGRTMYVIPYSMGPVGGPLSKI172 GC   R + V P S      PL K+ Sbjct: 8040 GCSCRRVLCVCPCSHSSSALPLQKV 8114Score = 38 (17.6 bits), Expect = 4.0e−285, Sum P (5) = 4.Oe−285Identities = 7/16 (43%), Positives = 9/16 (56%), Frame = +1 Query: 588LPNVNWDELMSIPKSY 603 L+NW    + S P SY Sbjct: 22654 LESFNWFSFVSCPDSY22701 Score = 37 (17.2 bits), Expect = 2.0e−48, Sum P (3) = 2.0e−48Identities = 6/14 (42%), Positives = 9/14 (64%), Frame = +1 Query: 117SVCHTPEGVKPMMG 130 +V H P  ++P MG Sbjct: 19603 TVNHDPMANRPFMG 19644Acetyl coa carboxylase >W09B6 Length = 32,900 Plus Strand HSPs: Score= 562 (259.1 bits), Expect = 0.0, Sum P (14) = 0.0 Identities 109/197(55%), Positives = 138/197 (70%), Frame = +2 Query: 1951SGFFDYGSFSEIMQPWAQTVVVGRARLGGIPVGVVAVETRTVELSVPADPANLDSEAKII 2010+G  D  SF EI   WA+++V GRARL GIP+GVV+ E R VPADPA       S+ + Sbjct: 28280TGICDTMSFDEICGDWAKSIVAGRARLCGIPIGVVSSEFRNFSTIVPADPAIDGSQVQNT 28459Query: 2011 QQAGQVWFPDSAFKTYQAIKDFNREGLPLMVFANWRGFSGGMKDMYDQVLKFGAYIVDGL2070 Q+AGQVW+PDSAFKT +AI D N+E LPLM+ A+ RGFSGG KD YD VLKFGA IVD L Sbjct:28460 QRAGQVWYPDSAFKTAEAINDLNKENLPLMIIASLRGFSGGQKIMYDMVLKFGAQIVDAL 28639Query: 2071 RECSQPVMVYIPPQAELRGGSWVVIDPTINPRHMEMYADRESRGSVLEPEGTVEIKFRKK2130    ++PV+VYIP   ELRGG+W V+D  I P  + + AD +SRG +LEP   V IKFRK Sbjct:28640 AVYNRPVIVYIPEAGELRGGAWAVLDSKIRPEFIHLVADEKSRQGILEPNAVVGIKFRKP 28819Query: 2131 DLVKTMRRVDPVYIRLA  2147  +++ M+R DP Y +L+ Sbjct: 28820MMMEMMKRSDPTYSKLS  28870 Score = 357 (164.6 bits), Expect = 0.0, Sum P(14) = 0.0 Identities = 68/124 (54%), Positives = 89/124 (71%), Frame= +2 Query: 303VGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVNRLAKQSRHLEVQIL 362+G+P+MIKASEGGGGKGIRK    +DF ++F +V  EV GSPIF+M+    +RH+EVQ+L Sbjct:23264 IGFPLMIKASEGGGGKGIRKCTKVEDFKSMFEEVAQEVQGSPIFLMKCVDGARHIEVQLL 23443Query: 363 ADQYGNAISLFGRDCSVQRRHQKXXXXXXXXXXXXXVFEHMEQCAVKLAKMVGYVSAGTV422 AD+Y N IS++ RDCS+QRR QK             + + M++ AV+LAK VGY SAGTV Sbjct:23444 ADRYENVISVYTRDCSIQRRCQKIIEEAPAIIASSHIRKSMQEDAVRLAKYVGYESAGTV 23623Query: 423 EYLY  426 EYLY Sbjct: 23624 EYLY  23635 Score = 345 (159.1bits), Expect = 0.0, Sum P (14) = 0.0 Identities = 65/116 (56%),Positives = 86/116 (74%), Frame = +2 Query: 1787KEEGLGAENLRGSGMIAGESSLAYDEIITISLVTCRAIGIGAYLVRLGQRTIQVENSHLI 1846K E +G ENL+GSG+IAGE++ AY E+ T   VT R++GIGAY  RL  R +Q + SHLI Sbjct:27794 KNEKIGVENLQGSGLIAGETARAYAEVPTYCYVTGRSVGIGAYTARLAHRIVQHKQSHLI 27973Query: 1847 LTGAGALNKVLGREVYTSNNQLGQIQIMHNNGVTHCTVCDDFEGVFTVLHWLSYMP1902 LTG  ALN +LG++VYTSNNQLGG ++M  NGVTH  V +D EG+  V+ W+S++P Sbjct:27974 LTGYEALNTLLGKKVYTSNNQLGGPEVNFRNGVTHAVVDNDLEGIAKVIRWMSFLP 28141Score = 319 (147.1 bits), Expect = 0.0, Sum P (14) = 0.0 Identities= 59/119 (49%), Positives = 80/119 (67%), Frame = +2 Query: 503HVIAARITSENPOEGFKPSSGTVQELNFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSW 562H IAARIT ENPD+ F+PS+G V E+NF S+++ W YFSV     +H+FADSQFGH F+ Sbjct: 23870HAIAARITCENPDDSFRPSTGKVYEINFPSSQDAWAYFSVGRGSSVHQFAOSQFGHIFTR 24049Query: 563 GENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESFQLNRIDTGWLDRLIAEKVQ621 G +R EA++ M   LK ++IR  F T V YL+ L+    F  N  +T WLD+ IA K++ Sbjct:24050 GTSRTEANNTMCSTLKHMTIRSSFPTQVNYLVDLMHDADFINNAFNTQWLDKRIAMKIK 24226Score = 303 (139.7 bits), Expect = 0.0, Sum P (14) = 0.0 Identities= 55/90 (61%), Positives = 70/90 (77%), Frame = +2 Query: 178PGGANNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMW 237P G N NN+ANV+ IL  A +  V AVWAGWGHASENP LP  L  + IAF+GPP+ AM+ Sbjct:22886 PSGTNKNNFANVDEILKHAIKYEVDAVWAGWGHASENPDLPRRLNDHNIAFIGPPASAMF 23065Query: 238 ALGDKIASSIVAQTAGIPTLPWSGSGLRVD  267+LGDKIAS+I+AQT G+PT+ WSGSG+ ++ Sbjct: 23066SLGDKIASTIIAQTVGVPTVAWSGSGITME  23155 Trehelase >C23H3 Length = 39,721Minus Strand HSPs: Score = 227 (104.5 bits), Expect = 1.0e−95, Sun P (6)= 1.0e−95 Identities = 36/67 (53%), Positives = 51/67 (76%), Frame = −2Query: 2 VIKNLGYMVDNHGFVPNGGRVYYLTRSQPPLLTPMVYEYYMSTGDLDFVMEILPTLDKEY 61+I N  +++++ GFVPNGGRVYYL RSQPP   PMVYEYY++T  D+ V +++P ++KEY Sbjct: 9798MILNFAHIIETYGFVPNGGRVYYLRRSQPPFFAPMVYEYYLATQDIQLVADLIPVIEKEY 9619 Query:62 EFWIKNR  68  FW + R Sbjct: 9618 TFWSERR  9598 Score = 182 (83.8bits), Expect = 1.0e−95, Sum P (6) = 1.0e−95 Identities = 32/92 (34%),Positives = 55/92 (59%), Frame = −2 Query: 146MDSIRTWSIIPADLNAFMCANARILASLYEIAGDFKKVKVFEQRYTWAKREMRELHWNET 205+ +I T +I+P DLNAF+C N  I+   Y++ G+  K   +  R+T  +    ++ + Sbjct: 9372 ISTIETTNIVPVDLNAFLCYNMNIMQLFYKLTGNPLKHLEWSSRFTNFREAFTKVFYVPA 9193Query: 206 DGIWYDYDIELKTHSNQYYVSNAVPLYAKCYD  237   WYDY++   TH+  ++ SNAVPL+++CYD Sbjct: 9192RKGWYDYNLRTLTHNTDFFASNAVPLFSQCYD  9097 Score = 178 (81.9 bits), Expect= 1.0e−95, Sum P (6) = 1.0e−95 Identities = 37/102 (36%), Positives= 55/102 (53%), Frame = −2 Query: 246VHDYLERQGLLKYTKGLPTSLANSSTQQWDKENAWPPMIHMVIEGFRTTGDIKLMKVAEK 305V++ ++  G      G+PTS+    +QQWD  N W PM HM+IEG R + +  L + A Sbjct: 9069VYNEMQNSGAFSIPGGIPTSMNEETNQQWDFPNGWSPMNHMIIEGLRKSNNPILQQKAFT 8890 Query:306 MATSWLTGTYQSFIRTHAMFEKYNVTPHTEETSGGGGGEYEV  347+A  WL    Q+F  +  M+EKYNV     + + GG  E +V Sbjct: 8889LAEKWLETNMQTFNVSDEMNEKYNVKEPLGKLATGGEYEVQV  8764 Score = 169 (77.8bits), Expect = 1.0e−95, Sum P (6) = 1.0s−95 Identities = 29/58 (50%),Positives = 41/58 (70%), Frame = −2 Query: 84YQYKAKLKVPRPESYREDSELAEHLQTEAEKIQMWSEIASAAETGWDFSTRWFSQNGD 141+QY+ + + PRPES+RED   AEH  T+  K Q + ++ SAAE+GWDFS+RWF  + D Sbjct: 9546FQYRTEAETPRPESFREDVLSAEEFTTKDRKKQFFKDLGSAAESGWDFSSRWFKNHKD 9373 Score= 76 (35.0 bits), Expect = 1.0e−95, Sum P (6) = 1.0e−95 Identities= 13/21 (61%), Positives = 15/21 (71%), Frame = −1 Query: 348QTGFGWTNCVILDLLDKYGDQ 368 Q GFGWTNG  LDL+  Y D+ Sbjct: 8722QAGFGWTNGAALDLIFTYSDR 8660 Score = 45 (20.7 bits), Expect = 1.0e−95, SumP (6) = 1.0e−95 Identities = 10/24 (41%), Positives = 15/24 (62%), Frame= −1 Query: 371 SSSTASKFSFSLSNITFVVFILYI 394 +SS++S F +S       VF+LYISbjct: 8545 TSSSSSTFGYSNILTLITVFVLYI 8474 Score = 38 (17.5 bits), Expect= 2.6e−98, Sum P (7) = 2.6e−98 Identities = 7/7 (100%), Positives = 7/7(100%), Frame = −2 Query: 342 GGEYEVQ 348 GGEYEVQ Sbjct: 8787 GGEYEVQ8767 Score = 37 (17.0 bits), Expect = 1.6e−19, Sum 9 (4) = 1.6e−19Identities = 8/18 (44%), Positives = 10/18 (55%), Frame = −2 Query: 217KTHSNQYYVSNAVPLYAK 234 K++   YYVS   P Y K Sbjct: 30345KFTAEPYYVSRTPPRYEK 30292 >W05E10 Length = 31,273 Minus Strand ESFs:Score = 224 (103.1 bits), Expect = 7.0e−90, Sum 9 (7) = 7.0e−90Identities = 43/67 (64%), Positives = 49/67 (73%), Frame = −1 Query: 2VIKNLGYMVDNHGFVPNGGRVYYLTRSQPPLLTPMVYEYYMSTGDLDFVMEILPTLDKEY 61+I+NL  MVD +GFVPNCGRVYYL RSQPP L  MVYE Y+ T D  FV E+LPTL  KE Sbjct:28S57 MIRNLASMVDKYGFVPNGGRVYYLQRSQPPFLAAMVYELYEATNDKAFVAELLPTLLKEL 28778Query: 62 EFWIKNR  68  FW + R Sbjct: 28777 NFNNEKR  28757 Score = 192(88.4 bits), Expect = 7.0e−90, Sum 2 (7) = 7.0e−90 Identities = 31/84(36%), Positives = 52/84 (61%), Frame = −3 Query: 154IIPADLNAFMCANARILASLYEIAGDFKKVKVFEQRYTWAKREMRELHWNETDGIWYDYD 213++P DLN + C N  I + LYE  GD K  ++F  +    +  ++ + +N TDG WYDY+ Sbjct: 28427VLPVDLNGLLCNNMDIMEYLYEQIGDTKNSQIFENKRAIFRDTVQNVFYNRTDGTWYDYN 28248Query: 214 IELKTHSNQYYVSNAVPLYAKCYD  237 +  ++H+ ++Y S AVPL+  CY+ Sbjct:28247 LRTQSHNPRFYTSTAVPLFTNCYN  28176 Score = 125 (57.5 bits), Expect= 7.0e−90, Sum P (7) = 7.0e−90 Identities = 20/48 (41%), Positives= 30/48 (62%), Frame = −2 Query: 249YLERQGLLKYTKGLPTSLAMSSTQQWDKENAWPPMIHMVIEGFRTTGD 296+ ++ G+  Y  G+PTS++  S QQWD  N W P  HM+IEG R + + Sbjct: 28092FFQKMGVFTYPGGIPTSMSQESDQQWDFPNGWSPNNHMIIEGLRKSAN 27949 Score = 90 (41.4bits), Expect = 7.0e−90, Sum P (7) = 7.0e−90 Identities = 15/18 (83%),Positives = 18/18 (100%), Frame = −2 Query: 120 EIASAAETGWDFSTRWFS 137++ASAAE+GWDFSTRWFS Sbjct: 28566 DLASAAESGWDFSTRWFS 28513 Score = 89(41.0 bits), Expect = 7.0e−90, Sum P (7) = 7.0e−90 Identities = 18/40(45%), Positives = 24/40 (60%), Frame = −1 Query: 79KQFPYYQYKAKLKVPRPESYREDSELAEHLQTEAEKIQMW 118K F YQYK     VPRPESYRD++ +  L    A++ Q + Sbjct: 28732KSFKVYQYKTASNVPRPESYRVDTQNSAKLANGADQQQFY 28613 Score = 77 (35.4 bits),Expect = 7.0e−90, Sum P (7) = 7.0e−90 Identities = 14/21 (66%),Positives 16/21 (76%), Frame = −3 Query: 348 QTGFGWTNGVILDLLDKYGDQ 368Q GFGW+NG ILDLL  Y D+ Sbjct: 24395 QDGFGWSNGAILDLLLTYNDR 24333 Score= 51 (23.5 bits), Expect = 7.0e−90, Sum P (7) = 7.0e−90 Identities= 11/27 (40%), Positives = 16/27 (59%), Frame = −3 Query: 365YGDQFASSSTASKFSFSLSNITFVVFI 391 Y   FASSS AS   FS +++ F + + Sbjct: 2846YN*PFASSSDASSCPFSTNSVIFSILV 2766 Score = 41 (18.9 bits), Expect= 3.3e−93, Sum P (8) = 3.3e−93 Identities = 7/9 (77%), Positives = 8/9(88%), Frame = −2 Query: 340 GGGGEYEVQ 348 G GGEY+VQ Sbjct: 24468GSGGEYDVQ 24442 Score = 39 (18.0 bits), Expect = 2.0e−37, Sum P (5)= 2.0e−37 Identities = 7/14 (50%), Positives = 8/14 (57%), Frame = −2Query: 221 NQYYVSNAVPLYAK 234 N YY+   V LY K Sbjct: 4524 NHYYIIQMVSLYTI4483 Score = 38 (17.5 bits), Expect = 4.0e−88, Sum P (7) = 4.0e−88Identities = 11/30 (36%), Positives = 13/30 (43%), Frame = −1 Query: 367DQFASSSTASKFSFSLSNITFVVFILYIFS 396 DQF  S   SKFS     + F      +FS Sbjct:7588 DQFVISFICSKFSSKNKKLYFCPSHFSLFS 7499

[0456] Gene fusions to GFP may also be constructed using, for example,the isocitrate dehydrogenase and isocitrate lyase genes to test fortransition to the glyoxylate cycle for the generation of glucose fromfatty acid metabolism during dauer arrest and recovery. Moreover, genefusions to hexokinase and glucose metabolism genes may be used test forthe switch to sugar based metabolism during reproductive development.

[0457] GFP fusions to these genes are expected to be transcriptionallyregulated depending on whether the animal is in fat storage, fatbreakdown, glycogen storage, or glycogen breakdown, trehalose storage,or trehalose breakdown metabolic states. Drugs that perturb theexpression of these genes may regulate transcriptional regulatoryproteins like DAF-3, DAF-12, and DAF-16 that may regulate batteries ofsuch metabolic genes. The GFP reporter genes provide a screen forperturbations of these regulatory genes. In addition, GFP fusions to thefull length proteins may also reveal subcellular localization, forexample, of fat storage proteins to fat droplets and regulation of thelocalization of these proteins. Drugs that perturb the localization ofthese fusion proteins may also be potent regulators of fat metabolismand may be used to treat obesity and diabetes.

[0458] Daf12-GFP Fusions

[0459] Daf-12 expression has been examined using a full length, rescuingGFP fusion to daf-12. We have found that the gene is expressed in asmall number of neurons in wild type animals, and many more in a daf-2,daft7, or pheromone induced dauer. Thus, the daf-12 expression patternis transcriptionally regulated by the daf pathway, perhaps by DAF-2 orDAF-16. We have also observed DAF-12/GFP expression in hypodermal cellsat the L2 and later stages, showing that daf-12 is a stage specific geneactivity in this tissue. This is consistent with the heterochroniceffects of weak daf-12 mutations.

[0460] This daf-12-GFP fusion also allowed us to view the dynamicregulation of daf-12 gene action during insulin and TGF-β regulateddauer or reproductive development. daf-12 encodes a nuclear hormonereceptor most closely related to the mammalian vitamin D and thyroidhormone receptors. We believe that the ligand for DAF-12 is likely to beregulated by insulin like or TGF-β daf gene signaling. That ligand maybe produced by the C. elegans equivalent to the thyroid gland, which maybe related to the subesophogeal glands of insects. For example, neuronsin the retrovesicular ganglion of C. elegans may produce the daf-12ligand under DAF-16 and DAF-3 control. The mapping of exactly whichneurons the daf-2 and age-1 gene products function to regulate dauerarrest will identify the neuron. To identify the genes regulated by theDAF-16 and DAF-3 transcription factors, a yeast one hybrid experimentmay be used (as described herein). GFP fusion to the genes so revealedshould show that they are expressed in the key DAF-12 ligand producingneuron and are responsive to daf-3 and daf-16 mutations.

[0461]C. elegans

[0462] In one working example, the above-described reporter geneconstruct is introduced into wild-type C. elegans according to standardmethods known in the art. If the enhancer element is operational, thenit is expected that reporter gene expression is turned on.Alternatively, in daf mutants (e.g., daf-7 or daf-2 mutants, whereinsulin signaling is defective) carrying the above-described reportergene construct, reporter gene activity is turned off.

[0463] Using this on/off distinction, test compounds or extracts areevaluated for the ability to disrupt the signaling pathways describedherein. In one working example, daf-2 mutant worms carrying the reportergene construct are used to assay the expression of the reporter gene.The majority of worms expressing the reporter gene will arrest at thedauer stage because of the daf-2 phenotype. If however the test compoundor extract inhibits DAF-16 activity, then the worms will exhibit adaf-2; daf-16 phenotype (i.e., do not arrest), developing to produceeggs. Such eggs are selected using a bleach treatment and reporter geneexpression in the test compound or extract is assayed according tostandard methods, e.g., worms are examined with an automated fluorometerto reveal the presence of reporter gene expression, e.g., GFP. Candidatecompounds that suppress the daf-2 phenotype or turn on reporter geneexpression, i.e., activate signals in the absence of DAF-2 receptor(e.g., PIP3 mimetics) or inactivate DAF-16, are considered useful in theinvention.

[0464] Analogous screens may also be performed using daf-7 mutants as ameans to identify drugs that inactivate other daf-genes, such as DAF-3,or compounds that activate the DAF-1/DAF-4 receptors. Such screens maybe coupled to reporter screens, for example, using GFP reporter geneswhose expression is under DAF-3 transcriptional control (e.g., the myoIIelement). Drugs identified in such screens are useful as DAF-7 mimetics.Because DAF-7 expression may be down regulated in obesity, such drugsare useful in the treatment of obesity induced

[0465] Type II diabetes

[0466] In yet another working example, C. elegans DAF-3 and DAF-16 genescan be replaced with a human homolog, (e.g., FKHR or FKHRL1 for DAF-16),and screens similar to those described above performed in the nematodesystem. Because drugs may act upstream of the transcription factors, itis useful to replace DAF-1, DAF-4, DAF-8,DAF-14, DAF-2, DAF-3, DAF-16,or AGE-1 with the appropriate human homolog, and to screen the humanizedC. elegans animals. Such screens are useful for identifying compoundshaving activities in humans.

[0467] Mammalian Cells

[0468] Mammalian insulin-responsive cell lines are also useful in thescreening methods of the invention. Here reporter gene constructs (forexample, those described above) are introduced into the cell line toevaluate the ability of a test compound or extract to modulate insulinand TGF-β signaling pathways using a second construct expressing a C.elegans daf age, or akt gene or their corresponding human homologs.Exemplary cell lines include, but are not limited to, mouse 3T3, L6 ,andLI cells (MacDougald et al., Ann. Rev. Biochem. 64: 345-373, 1995)Introduction of the constructs into such cell lines is carried outaccording to standard methods well known in the art.

[0469] To test a compound or extract, it is added to the cell line, andreporter gene expression is monitored. Compounds that induce reportergene expression in the absense of insulin or DAF-7 signaling areconsidered useful in the invention. Such compounds may also turn thecells into adipocytes, as insulin does.

[0470] Compounds identified in mammalian cells may be tested in otherscreening assays described herein, and, in general, test compounds maybe assayed in multiple screens to confirm involvement in insulin orDAF-7 signaling.

[0471] Metabolic control by DAF-7 protein may be tested using any knowncell line, e.g., those described herein.

[0472] In Vitro Screening Methods

[0473] A variety of methods are also available for identifying usefulcompounds in in vitro assays. In one particular example, test compoundsare screened for the ability to activate the phosphorylation of Smadproteins, DAF-8, DAF-14, or DAF-3, by DAF-1 or DAF-4 in vitro. In theseassays, DAF-8, DAF-14, or DAF-3 is preferably tagged with a heterologousprotein domain, for example, the myc epitope tag domain(s) by the methodof Ausubel et al., and are incubated with the C-terminal kinase domainof DAF-1 or DAF-4. Phosphorylation of the Smad proteins is preferablydetected by immunoprecipitation using antibodies specific to the tag,followed by scintillation counting. Test compounds may be screened inhigh throughout microtiter plate assays. A test compound thateffectively stimulates the phosphorylation of DAF-8, DAF-14, or DAF-3 isconsidered useful in the invention. Using these same general assays,compounds that activate the phosphorylation of DAF-16 by AKT or GSK-3may also be identified.

[0474] In another working example, test compounds are screened for theability to inhibit the in vitro association of DAF-16 and the Smadproteins DAF-3, or to preferentially activate the association of DAF-16with DAF-8 or DAF-14, or to inhibit the association of DAF-3 and DAF-16with DNA in vitro. These assays are carried out by any standardbiochemical methods that test protein-protein binding or protein-DNAbinding. In one particular example, to test for interactions betweenproteins, each protein is tagged with a different heterologous proteindomain (as described above). Immunoprecipitations are carried out usingan antibody to one tag, and an ELISA assay is carried out on theimmunoprecipitation complex to test for the presence of the second tag.In addition, if interaction capability is enhanced by a DAF or AKTkinase, this protein is also preferably included in the reactionmixture. Similarly, to test for interactions of these proteins with DNA,antibodies to the tag are utilized in immunoprecipitations, and thepresence of the DNA detected by the presence of the DNA label in theimmunoprecipitation complex. A test compound that effectively inhibitsthe association between these proteins or between DAF-3 and DAF-16 withDNA or both is considered useful in the invention.

[0475] In still another working example, test derivatives of PIP3 arescreened for the ability to increase in vitro AKT activity. This isaccomplished, in general, by combining a labeled PIP3 and an AKTpolypeptide in the presence and absence of the test compound underconditions that allow PIP3 :AKT to bind in vitro. Compounds are thenidentified that interfere with the formation of the PIP3:AKT complex.Test compounds that pass this first screen may then be tested forincreased AKT activation in vitro using GSK3 targets, or may be testedin nematodes or mammalian cells (as described above). An increase in AKTkinase activity is taken as an indication of a compound useful forameliorating or delaying an impaired glucose tolerance condition.

[0476] In yet another working example, DAF-3 or DAF-16 may be expressedin a yeast one-hybrid assay for transcriptional activation. Methods forsuch assays are described in Brent and Ptashne (Cell 43:729-736, 1985).A test compound that blocks the ability of DAF-3 or DAF-16 or both toactivate (or repress) transcription in this system is considered usefulin the invention.

[0477] In a final working example, compounds may be screened for theirability to inhibit an interaction between any of DAF-3, DAF-8, andDAF-14, or between DAF-3 and DAF-16. These in vivo assays may be carriedout by any “two-hybrid” or “interaction trap” method (for example, byusing the methods described by Vijaychander et al (Biotechniques 20:564-568)).

[0478] Screens for Isolating Longevity Therapeutics

[0479] The worm insulin signaling pathway has been implicated inlongevity control of C. elegans. Drugs which perturb this pathway couldaffect lifespan. Specifically, inhibition of the pathway would beexpected to extend lifespan. Drugs that inactivate the DAF-2 ligands,the AGE-1 P13 kinase, or decrease PIP3 signals in any way, for example,by increasing DAF-18/PTEN activity, decreasing PDK or AKT activity, ordecreasing the phosphorylation of DAF-16, are expected to increaselongevity. Such drugs may be used topically on the skin to increaselongevity in this organ. It is significant that AGE-1 generates a secondmessenger, PIP3, that directly regulates AKT and perhaps PDK activity.Antagonists to PIP3 are expected to extend lifespan, but any drug thatmimics the activity state of the pathway during aging is expected toincrease longevity. For example, drugs causing low activity of thefollowing proteins: DAF-2 agonist, DAF-2 receptor, AGE-1, PDK, and AKT,would increase longevity. Drugs causing high activity of PTEN or DAF-16(high meaning unphosphorylated) would increase longevity.

[0480] The insulin-like signaling genes that function in metabolicregulation and molting control also function to control aging in theanimal. We have shown that declines in daf-2 insulin receptor-like age-1PI-3 kinase, PDK-1, and akt-1/2 signaling cause dauer arrest and acorresponding increase in lifespan and a change in metabolism towardsfat storage. Thus, drugs that perturb the gene activities in thispathway are expected to regulate longevity as well as metabolism.Specifically, chemicals that decrease the activity of the humanhomologues of the DAF-2 insulin/IGF-I receptor homologue, decrease theactivity of the human homologue of the AGE-1/PI3 kinase, decrease theactivity of human homologues of AKT-1 and AKT-2, decrease the activityof the human homologue of PDK-1, or inhibit the phosphorylation of thehuman homologues of DAF-16 by the human homologues of AKT-1 and AKT-2increase longevity. Chemicals that increase the activity of DAF-18 PTENalso increase longevity, since decreases in DAF-18 activity decreaselongevity.

[0481] Similarly, the AGE-1 and AKT-½ proteins are enzymes with in vitroactivities. An AGE-1 assay preferably involves phophorylation of aphosphatidyl inositol target on the 3 position. The AKT-1 or AKT-2kinase assay involves phosphorylation of DAF-16 as well as the humanDAF-16 homologues, FKHR, FKHRL1, and AFX targets. Chemical screens fordrugs that inhibit in vitro activities of the human homologues of theseC. elegans kinases are first preferably performed in vitro. Chemicalsthat perturb this function are then tested on C. elegans mutantscarrying the human gene as the only functional copy of the gene. Ifdesired, positive drugs could then be tested on mice for those thatincrease longevity.

[0482] Screens for Identifying Pesticide and Nematicide Compounds

[0483] Our discovery that converging insulin-like and DAF-7 TGF-β likeneuroendocrine signals regulate diapause arrest in C. elegans is alsoimportant for the development of novel nematicides and pesticides. Forexample, the finding that insulin like signaling regulates metabolism inanimals as phylogenetically distant as nematodes and mammals suggeststhat this pathway was present in the common ancestor of worms andmammals over 600,000,000 years ago. Diapause, the suspension ofdevelopment by environmental signals, is phyletically general. In viewof the results described herein, insulin may regulatediapause/developmental arrest in many animals, including insects andother nematodes. In fact, human insulin induces recovery of diapausingcorn borers, and a cholinergic neuronal input to dauer arrest has beenshown herein to exist in both C. elegans and the mammalian parasiticnematode Ancylostoma caninum. These observations indicate that dafpathway results from C. elegans can be generalized to distant nematoderelatives as well as other invertebrates, most importantly, insects.Since diapause is a non feeding state, novel insecticides andnematicides may be developed which induce diapause if the insulin likepathway can be inactivated in insects or nematodes. Specifically, drugsthat induce downregulation of the insect or parasitic nematodehomologues of DAF-2, AGE-1, PDK-1, AKT-1, or AKT-2, or upregulation ofDAF-18 or DAF-16 would induce non feeding diapause. Such an agent wouldbe expected to protect crops from destruction by feeding and infection.In addition, agents that induce activity of DAF-2, AGE-1, PDK-1, AKT-1,or AKT-2, or downregulation of DAF-18 or DAF-16 would be expected toinduce recovery from diapause. Since diapause is an overwintering stressresistant state, and is generally the infective stage of plant andanimal parasitic nematodes, such agents would improve pest infestationsby perturbing the overwintering or infective process.

[0484] Modulatory Compounds

[0485] Our experimental results facilitate the isolation of compoundsuseful in the treatment of impaired glucose tolerance diseases that areantagonists or agonists of the insulin or TGF-β signaling pathwaysidentified in C. elegans and described above. Exemplary methods for theisolation of such compounds now follow.

[0486] Antagonists

[0487] As discussed above, useful therapeutic compounds include thosewhich down regulate the expression or activity of DAF-3, DAF-16, orDAF-18 (PTEN). To isolate such compounds, DAF-3, DAF-16, or DAF-18(PTEN) expression is measured following the addition of candidateantagonist molecules to a culture medium of DAF-3, DAF-16, or DAF-18(PTEN) expressing cells. Alternatively, the candidate antagonists may bedirectly administered to animals (for example, nematodes or mice) andused to screen for their effects on DAF-3, DAF-16, or DAF-18 (PTEN)expression.

[0488] DAF-3, DAF-16, or DAF-18 (PTEN) expression is measured, forexample, by standard Northern blot analysis (Ausubel et al., supra)using a DAF-3, DAF-16, or DAF-18 (PTEN) nucleic acid sequence (orfragment thereof) as a hybridization probe. The level of DAF-3, DAF-16,or DAF-18 (PTEN) expression in the presence of the candidate molecule iscompared to the level measured for the same cells, in the same culturemedium, or in a parallel set of test animals, but in the absence of thecandidate molecule. Preferred modulators for anti-diabetic oranti-obesity purposes are those which cause a decrease in DAF-3, DAF-16,or DAF-18 (PTEN) expression.

[0489] Alternatively, the effect of candidate modulators on expressionor activity may be measured at the level of DAF-3, DAF-16, or DAF-18(PTEN) protein production using the same general approach in combinationwith standard immunological detection techniques, such as Westernblotting or immunoprecipitation with a DAF-3, DAF-16, or DAF-18 (PTEN)specific antibody (for example, the DAF-3 or DAF-16 antibodies describedherein). Again, useful anti-diabetic or anti-obesity therapeuticmodulators are identified as those which produce a decrease in DAF-3,DAF-16, or DAF-18 (PTEN) polypeptide production. Antagonists may alsoaffect DAF-3, DAF-16, or DAF-18 (PTEN) activity without any effect onexpression level. For example, the identification of kinase cascadesupstream of DAF-3 and DAF-16 (as described herein) suggest that thephosphorylation state of these polypeptides is correlated with activity.Phosphorylation state may be monitored by standard Western blottingusing antibodies specific for phosphorylated amino acids. In addition,because DAF-3 and DAF-16 are transcription factors, reporter genesbearing operably linked DAF-3 or DAF-16 binding sites (for example, themyoII enhancer element) may be used to directly monitor the effects ofantagonists on DAF-3 or DAF-16 gene activity.

[0490] Candidate modulators may be purified (or substantially purified)molecules or may be one component of a mixture of compounds (e.g., anextract or supernatant obtained from cells). In a mixed compound assay,DAF-3, DAF-16, or DAF-18 (PTEN) expression is tested againstprogressively smaller subsets of the candidate compound pool (e.g.,produced by standard purification techniques, e.g., HPLC or FPLC;Ausubel et al., supra) until a single compound or minimal compoundmixture is demonstrated to modulate DAF-3, DAF-16, or DAF-18 (PTEN)expression.

[0491] Candidate DAF-3, DAF-16, or DAF-18 (PTEN) antagonists includepeptide as well as non-peptide molecules (e.g., peptide or non-peptidemolecules found, e.g., in a cell extract, mammalian serum, or growthmedium on which mammalian cells have been cultured).

[0492] Antagonists found to be effective at the level of cellular DAF-3,DAF-16, or DAF-18 (PTEN) expression or activity may be confirmed asuseful in animal models (for example, nematodes or mice). For example,the compound may ameliorate the glucose intolerance and diabeticsymptoms of mouse models for Type II diabetes (e.g., a db mouse model),mouse models for Type I diabetes, or models of streptozocin-induced βcell destruction.

[0493] A molecule which promotes a decrease in DAF-3, DAF-16, or DAF-18(PTEN) expression or DAF-3, DAF-16, or DAF-18 (PTEN) activity isconsidered particularly useful in the invention; such a molecule may beused, for example, as a therapeutic to decrease the level or activity ofnative, cellular DAF-3, DAF-16, or DAF-18 (PTEN) and thereby treat aglucose intolerance condition in an animal (for example, a human).

[0494] If desired, treatment with an antagonist of the invention may becombined with any other anti-diabetic or anti-obesity therapies.

[0495] Agonists

[0496] Also as discussed above, useful therapeutic compounds are thosewhich up regulate the expression or activity of DAF-1, DAF-2, DAF-4,DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-5, or PDK-1. To isolatesuch compounds, expression of these genes is measured following theaddition of candidate agonist molecules to a culture medium of DAF-1,DAF-2, DAF-4, DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-5, or PDK-1expressing cells. Alternatively, the candidate agonists may be directlyadministered to animals (for example, nematodes or mice) and used toscreen for effects on DAF-1, DAF-2, DAF-4, DAF-7, DAF-8, DAF-11, DAF-14,AGE-1, AKT, COD-5, or PDK-1 expression.

[0497] DAF-1, DAF-2, DAF-4, DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT,COD-5, or PDK-1 expression is measured, for example, by standardNorthern blot analysis (Ausubel et al., supra) using all or a portion ofone of these genes as a hybridization probe. The level of DAF-1, DAF-2,DAF-4, DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-5, or PDK-1expression in the presence of the candidate molecule is compared to thelevel measured for the same cells, in the same culture medium, or in aparallel set of test animals, but in the absence of the candidatemolecule. Preferred modulators for anti-diabetic or anti-obesitypurposes are those which cause an increase in DAF-1, DAF-2, DAF-4,DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-5, or PDK-1 expression.

[0498] Alternatively, the effect of candidate modulators on expressionmay be measured at the level of DAF-1, DAF-2, DAF-4, DAF-7, DAF-8,DAF-11, DAF-14, AGE-1, AKT, COD-5 or PDK-1 protein production using thesame general approach in combination with standard immunologicaldetection techniques, such as Western blotting or immunoprecipitationwith an appropriate antibody. Again, the phosphorylation state of thesepolypeptides is indicative of DAF activity and may be measured onWestern blots. Useful anti-diabetic or anti-obesity modulators areidentified as those which produce an increase in DAF-1, DAF-2, DAF-4,DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-S, or PDK-1 polypeptideproduction.

[0499] Candidate modulators may be purified (or substantially purified)molecules or may be one component of a mixture of compounds (e.g., anextract or supernatant obtained from cells). In a mixed compound assay,DAF-1, DAF-2, DAF-4, DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-5, orPDK-1 expression is tested against progressively smaller subsets of thecandidate compound pool (e.g., produced by standard purificationtechniques, e.g., HPLC or FPLC; Ausubel et al., supra) until a singlecompound or minimal compound mixture is demonstrated to modulate DAF-1,DAF-2, DAF-4, DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-5, or PDK-1expression.

[0500] Alternatively, or in addition, candidate compounds may bescreened for those which agonize native or recombinant DAF-1, DAF-2,DAF-4, DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-5, or PDK-1activities. In one particular example, DAF-1 and DAF-4 phosphorylationof DAF-8 and DAF-14, or AKT phosphorylation of DAF-16, may be activatedby agonists.

[0501] Candidate DAF-1, DAF-2, DAF-4, DAF-7, DAF-8, DAF-I 1, DAF-14,AGE-1, AKT, COD-5, or PDK-1 agonists include peptide as well asnon-peptide molecules (e.g., peptide or non-peptide molecules found,e.g., in a cell extract, mammalian serum, or growth medium on whichmammalian cells have been cultured).

[0502] Agonists found to be effective at the level of cellular DAF-1,DAF-2, DAF-4, DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-5, or PDK-1expression or activity may be confirmed as useful in animal models (forexample, nematodes or mice).

[0503] A molecule which promotes an increase in DAF-1, DAF-2, DAF-4,DAF-7, DAF-8, DAF-11, DAF-14, AGE-1, AKT, COD-5, or PDK-1 expression oractivities is considered particularly useful in the invention; such amolecule may be used, for example, as a therapeutic to increase thelevel or activity of these native, cellular genes and thereby treat aglucose intolerance condition.

[0504] If desired, treatment with an DAF-1, DAF-2, DAF-4, DAF-7, DAF-8,DAF-11, DAF-14, AGE-1, AKT, COD-5, or PDK-1 agonist may be combined withany other anti-diabetic or anti-obesity therapies.

[0505] Animal Model Systems

[0506] Compounds identified as having activity in any of theabove-described assays are subsequently screened in any number ofavailable diabetic or obesity animal model systems, including, but notlimited to ob (Coleman, Dibetologia 14: 141-148, 1978; Chua et al.,Science 271: 994-996, 1996; Vaisse et al., Nature Genet. 14:95-100,1996), db (Chen et al., Cell 84: 491-495, 1996), agouti mice, or fattyrats (Takaga et al. Biochem. Biophys. Res. Comm. 225: 75-83, 1996). Testcompounds are administered to these animals according to standardmethods. Additionally, test compounds may be tested in mice bearingknockout mutations in the insulin receptor, IGF-1 receptor (e.g., Liu etal., Cell 75:59-72, 1993), IR-related receptor, DAF-7 homolog, or any ofthe daf(FKHR, FKHRL1, AFX) genes described herein. Compounds can also betested using any standard mouse or rat model of Type I diabetes, e.g., astreptozin ablated pancreas model.

[0507] In one particular example, the invention involves theadministration of DAF-7 or its homolog as a method for treating diabetesor obesity. Evaluation of the effectiveness of such a compound isaccomplished using any standard animal model, for example, the animaldiabetic model systems described above. Because these mouse diabeticmodels are also associated with obesity, they provide preferred modelsfor human obesity associated Type II diabetes as well. Such diabetic orobese mice are administered C. elegans or human DAF-7 according tostandard methods well known in the art. Treated and untreated controlsare then monitored for the ability of the compound to ameliorate thesymptoms of the disease, e.g., by monitoring blood glucose,ketoacidosis, and atherosclerosis. Normalization of blood glucose andinsulin levels is taken as an indication that the compound is effectiveat treating a glucose intolerance condition.

[0508] Therapy

[0509] Compounds of the invention, including but not limited to, DAF-7and its homologs, and any antagonist or agonist therapeutic agentidentified using any of the methods disclosed herein, may beadministered with a pharmaceutically-acceptable diluent, carrier, orexcipient, in unit dosage form. Conventional pharmaceutical practice maybe employed to provide suitable formulations or compositions toadminister such compositions to patients. Although intravenousadministration is preferred, any appropriate route of administration maybe employed, for example, parenteral, subcutaneous, intramuscular,intracranial, intraorbital, ophthalmic, intraventricular, intracapsular,intraspinal, intracisternal, intraperitoneal, intranasal, aerosol, ororal administration. Therapeutic formulations may be in the form ofliquid solutions or suspensions; for oral administration, formulationsmay be in the form of tablets or capsules; and for intranasalformulations, in the form of powders, nasal drops, or aerosols.

[0510] Methods well known in the art for making formulations are foundin, for example, “Remington's Pharmaceutical Sciences.” Formulations forparenteral administration may, for example, contain excipients, sterilewater, or saline, polyalkylene glycols such as polyethylene glycol, oilsof vegetable origin, or hydrogenated napthalenes. Biocompatible,biodegradable lactide polymer, lactide/glycolide copolymer, orpolyoxyethylene-polyoxypropylene copolymers may be used to control therelease of the compounds. Other potentially useful parenteral deliverysystems for antagonists or agonists of the invention includeethylene-vinyl acetate copolymer particles, osmotic pumps, implantableinfusion systems, and liposomes. Formulations for inhalation may containexcipients, for example, lactose, or may be aqueous solutionscontaining, for example, polyoxyethylene-9-lauryl ether, glycocholateand deoxycholate, or may be oily solutions for administration in theform of nasal drops, or as a gel.

[0511] DAF polypeptides are administered at any appropriateconcentration, for example, for DAF-7, at a concentration of around 10nM.

[0512] Pedigree Analysis and Genetic Testing

[0513] The discovery described herein that DAF polypeptides are involvedin glucose metabolism enables assays for genetic testing to identifythose individuals with predispositions toward the development of glucoseintolerance conditions, such as diabetes or obesity, by determining thepresence of a mutation found in a human gene having identity to any ofthe C. elegans daf-1, daf-2, daf-3, daf-4, daf-7, daf-8, daf-11, daf-14,daf-16, age-1, akt, daf-18 (PTEN), or pdk-1 genes. In one embodiment,the development of this testing method requires that the individual be amember of a family that has multiple affected and unaffected memberscarrying one mutation from the list of above-listed genes. Those skilledin the art will understand that a diabetic or obesity phenotype may beproduced by daf, age, or akt mutations found on different chromosomes,and that low resolution genetic mapping of the diabetic condition insingle family pedigrees will be sufficient to favor some daf, age, orakt genes over others as causing the glucose intolerance condition in aparticular pedigree. In one particular example, mutations associatedwith glucose intolerance may be found in different genes in, forexample, the DAF-7 signaling pathway in each pedigree. In addition,because mutations in a common pathway can show complex geneticinteractions, multiple DAF mutations may segregate in single pedigress.These mutations can behave recessively in some genetic backgrounds anddominantly in others.

[0514] Those skilled in the art further understand that, to determinedisease linkage with a chromosomal marker, it may be necessary toevaluate the association of inheritance patterns of several differentchromosomal markers (for example, from the collection of highlypolymorphic mapped DNA allelic variants) in the genomic DNAs of familymembers and of the clinically affected individuals. Methods commonlyused in determining segregation patterns of human genetic diseases arewell known in the art. In addition, methods are known in the art fordetermining whether individuals in a family are useful for providinginformation to determine co-segregation of an allele with a glucoseintolerance trait.

[0515] Here, fragments of genomic DNA (e.g., RFLP fragments) areprepared from each of the available members of the family, and eachdistinctive DNA allelic variant of the polymorphic chromosome markerwithin the family is evaluated to determine which polymorphisms (i.e.,chromosomal region) is linked with the glucose intolerance phenotypewithin a particular family. It is preferred that the parents of themarker individual be heterozyous for a DNA allelic variant so that thesegregation pattern of the DNA allelic variant linked with the diabeticor obese phenotype in the marker can be recognized. The inheritance ofthe diabetic phenotype can be judged to be dominant or recessive,depending on the pattern of inheritance. Most diabetes is dominantlyinherited, and therefore inbred pedigrees are generally not necessary inthe etiology of the diabetic condition.

[0516] With respect to Type II diabetes, the highest rate of this kindof diabetes in the world is found in American Indians of the Pima tribe.Such families are useful for mapping one particular cause of diabetes,but, in general, diabetes is caused by mutations in a variety of genes,including daf genes. Thus, by testing for low resolution linkage to acandidate daf, age, or akt mutation, and then by sequencing theparticular linked daf gene in affected and unaffected individuals, aparticular daf mutation can be associated with a particular diabeticpedigree.

[0517] Human DAF homologues are mapped to chromosome regions usingstandard methods. For example, the probable DAF-16 homologues FKHR andFKHRL1 are located on chromosomes 13 and 11, respectively, and AFX islocated on the X chromosome. In particular, candidate loci for human DAFhomologues are as follows: P85=5q13, P110alpha=3q26.3, PTEN=10q23.3,Akt-1=14q32.3, Akt-2=19q13.1, FKHRL1=11q23, FKHR=13q14.1, Afx=xq13.1,and Daf-7 (GDF-8)=2q32.1 (the position at which NIDDM1 has been mapped).

[0518] Any daf akt, or age genes mapping to the approximate chromosomalregions associated with diabetes or glucose intolerance are sequencedfrom affected and unaffected individuals. Preferably, at least two genesper pedigree of 5-20 affected (and unaffected controls) are sequenced.The daf genomic regions are PCR amplified and compared between affectedand unaffected DNA samples. Mutations detected in affected individualsare expected to (but need not) map to conserved domains of the DAFgenes. Because it is known that not all carriers of knowndiabetes-inducing mutations show metabolic defects, we expect that somenon-diabetic non-glucose intolerant family members will carry the samedaf mutation as affected family members. For this reason, a correlationof affected family members with a daf mutation is more important than acorrelation of nonaffected with no mutation. Those skilled in the artwill know that phenotypic classification of affected and unaffectedindividuals can greatly enhance the power of this genetic analysis(Nature Genet. 11: 241-247, 1995). In addition, other mutations in thesame daf gene are expected in some but not all diabetic pedigrees. Fordominant diabetic inheritance, the affected individuals carry a daf,age, or akt mutation as well as a normal allele. For recessive diabeticinheritance, individuals carry two daf mutations that may be identicalor two independent mutations in the same gene. In addition, somediabetic individuals may carry mutations in more than one daf, age, orakt gene (so called non-allelic non-complementation).

[0519] It is routine in the art of genetic counseling to determine riskfactors given the presence of a closely linked molecular genetic markerin the genomic DNA of the individual and when combined with theadditional understanding provided by the pedigree of the individual inthe family. For example, a risk factor may be calculated for anindividual in an age, akt, or daf chromosome family in a manner similarto those described for assessing the risk of other commonly knowngenetic diseases that are known to run in families, e.g., Huntington'sdisease and cystic fibrosis.

[0520] Once mutations in daf akt, or age genes are associated withdiabetes in a pedigree analysis, diagnostic PCR sequencing of these dafgenes can be used to diagnose glucose intolerant, prediabetic, diabetic,obesity, and atherosclerotic conditions. Preferably, the daf akt, or agegene regions are PCR amplified from patients and mutations detected inthe daf genes using standard DNA sequencing or oligonucleotidehybridization techniques. The use of such gene sequences or specificantibody probes to the products of these sequences provide valuablediagnostics, particularly in view of the likelihood there exist twoclasses of type II diabetics: those with defects in the TGF-β signalinggenes, and those with defects in insulin signaling genes. Such genetictests will influence whether drugs that affect DAF-7 TGF-β or DAF-2insulin like signals are prescribed.

[0521] To carry out the above analysis (as well as the other screening,diagnostic, and therapeutic methods described herein), mammalianhomologs corresponding to the C. elegans daf-1, age-1, daf-4, daf-8, anddaf-7 genes are isolated as described above for daf-2, daf-3, anddaf-16. Again, standard hybridization or PCR cloning strategies areemployed, preferably utilizing conserved DAF, AGE, or AKT motifs forprobe design followed by comparison of less conserved sequences flankingthese motifs. Exemplary motifs for these genes are as follows: DAF-1(139 amino acid motif) (SEQ ID NO: 13)   274TSGSGMGPTTLHKLTIGGQIRLTGRVGSGRFGNVSRGDYRGEAVAVKVFNALDEPAFHKETEIFETRMLRHPNVLRYIGSDRVDTGFVTELWLVTEYHPSGSLIIDFLLENTVNIETYYNLMRSTASGLAFL HNQIGGSK  412 DAF-1 (62amino acid motif) (SEQ ID NO: 14)   450EDAASDIIANENYKCGTVRYLAPEILNSTMQFTVFESYQCADVY SFSLVMWETLCRCEDGDV  511DAF-1 (31 amino acid motif) (SEQ ID NO: 15)   416KIPAMAIIRDIKSKNIMVKNDLTCAIGDLGLSL  466 DAF-1 (72 amino acid motif) (SEQID NO: 16)   520 IPYIEWTDRDPQDAQMFDVVCTRRLRPTENPLWKDHPEMIKHIMEIIKTCWNGNPSARFTS YICRKRMDERQQ  591 AGE-1 (150 amino acid motif) (SEQ IDNO: 17)   991 YFESVDRFLYSCVGYSVATYIMGIKDRHSDNLMLTEDGKYVIIIDFGHILGHGKTKLGIQRDRQPFILTEHFMTVIRSGKSVDGNSHELQKFKTLCVEAYEVMWNNRDLFVSLFTLMLGMELPELSTKADLD HLKKTLFCNGESKEEARKF  1140AGE-1 (113 amino acid motif) (SEQ ID NO: 18)   826SPLDPVYKLGEMIIDKAIVLGSAKRPLMLHWKNKNPKSDLHLPFCAMIFKNGDDLRQDMLVLQVLEVMDNIWKAANIDCCLNPYAVLPMGEMIGIIEVVPNCKTIFEIQVGTG  938 AGE-1 (106 amino acid motif) (SEQ ID NO:19)   642 LAFVWTDRENFSELYVMLEKWKPPSVAAALTLLGKRCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRA LCDYRIGNRLFWLLRAEI  747AGE-1 (60 amino acid motif) (SEQ ID NO: 38)    91EIKLSDFKHQLFELIAPMKWGTYSVKPQDYVFRQLNNFGEIEVI FNDDQPLSKLELHGTF  150 AKT(121 amino acid motif) (SEQ ID NO: 60) 33685QVLDDHDYGRCVDWWGVGVVMYEMMCGRLPFYSKDHNKLFELIMAGDLRFPSKLSQEARTLLTGLLVKDPTQRLGGGPEDALEICRADFFRTVDWEATYRKEIEPPYKPNVQSETDTSYFD  34047 AKT (66 amino acid motif) (SEQID NO: 61) 32314 TMEDFDFLKVLGKGTFGKVILCKEKRTQKLYAIKILKKDVIIAREEVAIITLTENRVLQRCKHPFLT  32511 AKT (45 amino acid motif) (SEQ ID NO: 62)33509 KLENLLLDKDGHIKIADFGLCKEEISFGDKTSTFCGTPEYLAPE V  33643 AKT (57amino acid motif) (SEQ ID NO: 63) 32667YFQELKYSFQEQHYLCFVMQFANGGELFTHVRKCGTFSEPRARF YGAEIVLALGYLH  32837 AKT(59 amino acid motif) (SEQ ID NO: 64) 31846STFAIFYFQTMLFEKPRPNMFMVRCLQWTTVIERTFYAESAEVR QRWIHAIESISKKYK  32022 AKT(33 amino acid motif) (SEQ ID NO: 65) 33156LQELKYSFQTNDRLCFVMEFAIGGDLYYHLNRE  33254 AKT (21 amino acid motif) (SEQID NO: 66) 30836 VVIEGWLHKKGEHIRNWRPRF  30898 AKT (26 amino acid motif)(SEQ ID NO: 67) 33276 FSEPRARFYGSEIVLALGYLHANSIV  33353 DAF-4 (139 aminoacid motif) (SEQ ID NO: 20)   380EYWIVTEFHERLSLYELLKNNVISITSANRIIMSMIDGLQFLHDDRPYFFGHPKKPIIHRDIKSKNILVKSDMTTCIADFGLARIYSYDIEQSDLLGQVGTKRYMSPEMLBGATEFTPTAFKAMDVYSMGLV MWEVISR  518 DAF-4 (61amino acid motif) (SEQ ID NO: 21)   537IGFDPTIGRMRNYVVSKKERPQWRDEHKHEYMSLLKKVTEEMWD PEACARITAGCAFARV  597 DAF-4(20 amino acid motif) (SEQ ID NO: 22)   305 PITDFQLISKGRFGKVFKAQ  324DAF-8 (163 amino acid motif) (SEQ ID NO: 23)   382TDSETRSRFSLGWYNNPNRSPQTAEVRGLIGKGVRFYLLAGEVYVENLCNIPVFVQSIGANMKNGFQLNTVSKLPPTGTMKVFDMRLFSKQLRTAAEKTYQDVYCLSRMCTVRVSFCKGWGEHYRRSTVLRSPVWFQAHLNNPMHWVDSVLTCMGAPPRICSS  544 DAF-8 (44 amino acid motif) (SEQID NO: 24)    91 RAFRFPVIRYESQVKSILTCRI-IAENSHSRNVCLNPYHYRWVE LP  134DAF-8 (38 amino acid motif) (SEQ ID NO: 25)   341VEYEESPSWLKLIYYEEGTMIGEKADVEGHIICLIDGFT  378 DAF-14 (39 amino acidmotif) (SEQ ID NO: 68)  9709 IRVSFCKGFGETYSRLKVVNLPCWIEIILHEPADEYDTV9825 DAF-14 (45 amino acid motif) (SEQ ID NO: 69)  9409SRNSKSSQIRNTVGAGIQLAYENGELWLTVLTDQIVFVQCPFLN Q  9543 DAF-14 (29 aminoacid motif) (SEQ ID NO: 70)  9160 NEMLDPEPKYPKEEKPWCTIFYYELTVRV  9246DAF-14 (29 amino acid motif) (SEQ ID NO: 71)  9307QLGKAFEAKVPTITIDGATGASDECRMSL  9393 DAF-12 (105 amino acid motif) (SEQID NO: 72)   103 SPDDGLLDSSEESRRRQKTCRVCGDHATGYNFNVITCESCKAFFRRNALRPKEFKCPYSEDCELNSVSRRFCQKCRLRKCFTVGMKKE WILNEEQLRRRKNSRLN  207DAF-12 (89 amino acid motif) (SEQ ID NO: 73)   109LDSSEESRRRQKTCRVCGDHATGYNFNVITCESCKAFFRRNALRPKEFKCPYSEDCEINSVSRRFCQKCRLRKCFTVGMKKEWILNFE Q  197 DAF-12 (73 aminoacid motif) (SEQ ID NO: 74)   551DIMMMDVTMRRFVKVAKGVPAFREVSQEGKFSLLKGGMIEMLTVRGVTRYDASTNSFKTPTIKGQNVSVNVD  623 DAF-11 (112 amino acid motif) (SEQ IDNO: 75)   708 SGSLVDLMIKNLTAYTQGLNETVKNRTAELEKEQEKGDQLLMIELLPKSVANDLKNGIAVDPKVYENATILYSDIVGFTSLC SQSQPMEVVTLLSGMYQRFDLIISQQGGYKV  819 DAF-11 (107 amino acid motif) (SEQ IDNO: 76)   825 METIGDAYCVAAGLPVVMERDHVKSICMIALLQRDCLHHFEIPHRPGTFLNCRWGFNSGPVFAGVIGQKAPRYACFGEAVILASKMES SGVEDRIQMTLASQQLLEE  931DAE-11 (43 amino acid motif) (SEQ ID NO: 77)   520DILKGLEYIHASAIDFHGINLTLHNCMLDSIIWIVKLSGFGVNR L  562 DAE-11 (15 aminoacid motif) (SEQ ID NO: 78)   618 DMYSFGVILHEIILK  632 DAF-7 (60 aminoacid motif) (SEQ ID NO: 26)   290NLAETGHSKIMRAAHKVSNPEIGYCCHPTEYDYIKLIYVNRDGR VSIANVNGMIAKKCGC  349 DAF-7(20 amino acid motif) (SEQ ID NO: 27)   265 DWIVAPPRYNAYMCRGDCHY  284DAF-7 (43 amino acid motif) (SEQ ID NO: 28)   240VCNAEAQSKGCCLYDLEIEFEKIGWDWIVAPPRYNAYMCRGDC 282 DAF-7 (70 amino acidmotif) (SEQ ID NO: 29)   281DCHYNAHLIFNLAETGHSKIMRAALIKVSNPEIGYCCHPTEYDYIKLIYVNRDGRVSIANVN GMIARKCGCS  350 DAF-7 (35 amino acid motif) (SEQ IDNO: 30)   250 CCLYDLEIEFEKIGWDWIVAPPRYNAYMCRGDCHY  284 DAF-7 (13 aminoacid motif) (SEQ ID NO: 51) GWDWIVAPPRYNA DAF-7 (9 amino acid motif)(SEQ ID NO: 364) GWDXXIAPK

[0522] In one particular example, mammalian DAF-7 may be identifiedusing the sub-domain amino acids 314-323. Exemplary degenerateoligonucleotides designed to PCR amplify this domain or hybridize (forexample, as described in Burglin et al., (Nature 341:239-243, 1989) areas follows: aa 263 oligo: GGNTGGGAYTRINRTNRTNGCNCC (23-met, 16,000-folddegeneracy) (SEQ ID NO: 31) aa 314 oligo: TGYTGYNNNCCNACNGAR (18-met,8000-fold degeneracy). (SEQ ID NO: 32)

[0523] The DNA sequence between the oligonucleotide probes isdetermined, and those sequences having the highest degree of homologyare selected. Once isolated, these sequences are then tested in a C.elegans daf-7 mutant or mouse model as described above for the abilityto functionally complement the mutation or ameliorate the glucoseintolerance phenotype.

[0524] To date, the closest homologues of C. elegans appear to bemembers of the vertebrate GDF-8 and GDF-11 gene family, with arepresentative homologue shown in FIGS. 47A and 47B. These humanproteins, whose composition and function in muscle size determinationhave been described (McPherron A C, Lee S J, Proc Natl Acad SciU.S.A.1997 Nov 11;94(23):12457-61), may also function in metaboliccontrol in conjunction with insulin. Alterntaively, there may be morethan one DAF-7 orthologue, or a closer relative to DAF-7 in mammaliandatabases that subserves the metabolic role, whereas GDF-8,11 serverelated roles in muscle control. The DAF-7 gene does not appear in wormEST databases, most likely because it is expressed in a single neuron, avery low expression level. Even though the mammalian EST databases areabout 10 fold larger than the C. elegans EST base, if human DAF-7 isexpressed in a small set of neurons, it is not surprising that it hasnot yet been seen in the EST database. Nonetheless, human DAF-7 may beinstantly recognized using the motif, GWDXXIAPK as a means to searchupdated sequence databases or by standard techniques as describedherein.

Other Embodiments

[0525] In other embodiments, the invention includes any protein whichpossesses the requisite level of amino acid sequence identity (asdefined herein) to DAF-2, DAF-3, or a DAF-16 sequence; such homologsinclude other substantially pure naturally-occurring mammalian DAFpolypeptides (for example, human DAF polypeptides) as well as allelicvariants; natural mutants; induced mutants; proteins encoded by DNA thathybridizes to the DAF DNA sequence or degenerate conserved domains ofDAF proteins (e.g., those described herein) under high stringencyconditions; and proteins specifically bound by antisera directed to aDAF-2, DAF-3, or DAF-16 polypeptide.

[0526] The invention further includes analogs of any naturally-occurringDAF-2, DAF-3, or DAF-16 polypeptides. Analogs can differ from thenaturally-occurring protein by amino acid sequence differences which donot destroy function, by post-translational modifications, or by both.Modifications include in vivo and in vitro chemical derivatization ofpolypeptides, e.g., acetylation, carboxylation, phosphorylation, orglycosylation; such modifications may occur during polypeptide synthesisor processing or following treatment with isolated modifying enzymes.Analogs can also differ from the naturally-occurring DAF polypeptide byalterations in primary sequence. These include genetic variants, bothnatural and induced (for example, resulting from random mutagenesis byirradiation or exposure to ethanemethylsulfate or by site-specificmutagenesis as described in Sambrook, Fritsch and Maniatis, MolecularCloning: A Laboratory Manual (2d ed.), CSH Press, 1989, or Ausubel etal., supra). Also included are cyclized peptides, molecules, and analogswhich contain residues other than L-amino acids, e.g., D-amino acids ornon-naturally occurring or synthetic amino acids, e.g., β or γ aminoacids.

[0527] In addition to full-length polypeptides, the invention alsoincludes DAF-2, DAF-3, and DAF-16 polypeptide fragments. As used herein,the term “fragment,” means at least 20 contiguous amino acids,preferably at least 30 contiguous amino acids, more preferably at least50 contiguous amino acids, and most preferably at least 60 to 80 or morecontiguous amino acids. Fragments of such DAF polypeptides can begenerated by methods known to those skilled in the art or may resultfrom normal protein processing (e.g., removal of amino acids from thenascent polypeptide that are not required for biological activity orremoval of amino acids by alternative mRNA splicing or alternativeprotein processing events).

[0528] For certain purposes, all or a portion of the DAF-2, DAF-3, orDAF-16 polypeptide sequence may be fused to another protein (forexample, by recombinant means). In one example, the DAF polypeptide maybe fused to the green fluorescent protein, GFP (Chalfie et al., Science263:802-805, 1994). Such a fusion protein is useful, for example, formonitoring the expression level of the DAF polypeptide in vivo (forexample, by fluorescence microscopy) following treatment with candidateor known DAF agonists or antagonists.

[0529] The methods of the invention may be used to diagnose or treat anycondition related to glucose intolerance or obesity in any mammal, forexample, humans, domestic pets, or livestock. Where a non-human mammalis diagnosed or treated, the DAF polypeptide, nucleic acid, or antibodyemployed is preferably specific for that species.

[0530] All publications and patent applications mentioned in thisspecification are herein incorporated by reference to the same extent asif each independent publication or patent application was specificallyand individually indicated to be incorporated by reference.

[0531] Other embodiments are within the following claims.

What is claimed is:
 1. A method of diagnosing an impaired glucosetolerance condition, obesity, or a propensity thereto in a patient, saidmethod comprising analyzing the level of PTEN expression or activity ina sample isolated from said patient, whereby an increase in said levelof PTEN expression or activity relative to a control sample is anindication of an impaired glucose tolerance condition, obesity, or apropensity thereto.
 2. A method of diagnosing longevity in a patient,said method comprising analyzing the level of PTEN expression oractivity in a sample isolated from said patient, whereby a decrease insaid level of PTEN expression or activity relative to a control sampleis an indication of decreased longevity.
 3. The method of claim 1 or 2,wherein said level of PTEN expression or activity is analyzed bymeasuring PTEN lipid phosphatase activity.
 4. A method of amelioratingor delaying the onset of an impaired glucose tolerance condition in apatient, said method comprising administering to said patient atherapeutically-effective amount of a compound that decreases PTENexpression or activity.
 5. A method of increasing longevity in apatient, said method comprising administering to said patient atherapeutically-effective amount of PTEN polypeptide or a compound thatincreases PTEN expression or activity.
 6. The method of claim 4 or 5,wherein said PTEN is human PTEN.